update retrieval
Browse files
app.py
CHANGED
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@@ -151,15 +151,23 @@ def retrieval():
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st.markdown('\n\n\n\n Plot of protein to be added soon. \n\n\n\n')
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selected_encoder = st.selectbox(
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'Select encoder for protein target',('SeqVec')
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)
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st.write('TODO HyperPCM predicts the QSAR model for the given protein target.')
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col1, col2 = st.columns(2)
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st.markdown('\n\n\n\n Plot of protein to be added soon. \n\n\n\n')
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selected_encoder = st.selectbox(
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'Select encoder for protein target',('None', 'SeqVec')
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)
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if selected_encoder == 'SeqVec':
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from bio_embeddings.embed import SeqVecEmbedder
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encoder = SeqVecEmbedder()
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embeddings = encoder.embed_batch([sequence])
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for emb in embeddings:
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embedding = encoder.reduce_per_protein(emb)
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break
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else:
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st.write('Only SeqVec is currently available to encode protein structures.')
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embedding = None
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if embedding is not None:
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st.write(f'{selected_encoder} embedding')
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st.write(embedding)
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st.markdown('### Retrieval')
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st.write('TODO HyperPCM predicts the QSAR model for the given protein target.')
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col1, col2 = st.columns(2)
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