deepakri201 commited on
Commit
25188f0
·
1 Parent(s): fb3df3b

simplifying imports

Browse files
Files changed (1) hide show
  1. app.py +7 -8
app.py CHANGED
@@ -3,12 +3,9 @@ from idc_index import index
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  from pathlib import Path
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  import pydicom
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  import pandas as pd
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- # import pyarrow as pa
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- # import pyarrow.parquet as pq
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  from tempfile import TemporaryDirectory
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  import os
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  from pathlib import Path
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- # import polars
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  import pydicom.datadict as dd
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  import shutil
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  import papermill as pm
@@ -65,11 +62,13 @@ if st.button("Run inference"):
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  subprocess.run(["wget", "https://raw.githubusercontent.com/deepakri201/DICOMScanClassification_pw41/main/DICOMScanClassification_user_demo.ipynb"])
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- pm.execute_notebook(
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- "DICOMScanClassification_user_demo.ipynb",
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- 'output.ipynb',
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- parameters = dict(SeriesInstanceUID=selected_series)
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- )
 
 
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  with open('output.ipynb', "rb") as f:
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  st.download_button(
 
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  from pathlib import Path
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  import pydicom
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  import pandas as pd
 
 
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  from tempfile import TemporaryDirectory
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  import os
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  from pathlib import Path
 
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  import pydicom.datadict as dd
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  import shutil
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  import papermill as pm
 
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  subprocess.run(["wget", "https://raw.githubusercontent.com/deepakri201/DICOMScanClassification_pw41/main/DICOMScanClassification_user_demo.ipynb"])
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+ # pm.execute_notebook(
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+ # "DICOMScanClassification_user_demo.ipynb",
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+ # 'output.ipynb',
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+ # parameters = dict(SeriesInstanceUID=selected_series)
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+ # )
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+
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+ subprocess.run(["papermill", "-p", "SeriesInstanceUID", selected_series, "DICOMScanClassification_user_demo.ipynb", "output.ipynb"])
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  with open('output.ipynb', "rb") as f:
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  st.download_button(