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Update app.py
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app.py
CHANGED
@@ -99,16 +99,17 @@ if st.button('Generate Molecules'):
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# Tokenize the core SMILES
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input_ids = tokenizer(core_smiles, return_tensors='pt').input_ids
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# Generate molecules using the model
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output_ids = model.generate(
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)
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# Decode generated molecule SMILES
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generated_smiles = [
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# Tokenize the core SMILES
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input_ids = tokenizer(core_smiles, return_tensors='pt').input_ids
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# Generate molecules using the model with diverse beam search
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output_ids = model.generate(
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input_ids=input_ids,
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max_length=128,
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do_sample=False, # Use deterministic beam search
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num_return_sequences=num_molecules,
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num_beams=max(num_molecules * 2, 5), # Ensure enough beams for diversity
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num_beam_groups=num_molecules, # Equal to num_return_sequences
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diversity_penalty=0.5 # Adjust this value as needed
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)
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# Decode generated molecule SMILES
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generated_smiles = [
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