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f083f50
1
Parent(s):
950486e
Add predict button
Browse files- pages/about.py +7 -1
- pages/predict.py +0 -1
pages/about.py
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@@ -27,4 +27,10 @@ CIPHER is a knowledge graph-based AI algorithm for diagnostic and therapeutic di
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*Model training.* Next, to convert this trove of knowledge into an AI model with diagnostic and therapeutic capabilities, we employed graph representation learning, a deep learning method to model biomedical networks by embedding graphs into informative low-dimensional vector spaces. We trained a state-of-the-art heterogeneous graph Transformer to learn graph embeddings that encode the relationships in the KG.
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Through CIPHER, we seek to enable molecular subtyping and patient stratification of PD by integrating genetic and clinical progression data (*e.g.*, PPMI and HBS2.0 cohorts) and nominate genes, proteins, and pathways for in-depth mechanistic studies in stem cell and other PD models.
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""")
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*Model training.* Next, to convert this trove of knowledge into an AI model with diagnostic and therapeutic capabilities, we employed graph representation learning, a deep learning method to model biomedical networks by embedding graphs into informative low-dimensional vector spaces. We trained a state-of-the-art heterogeneous graph Transformer to learn graph embeddings that encode the relationships in the KG.
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Through CIPHER, we seek to enable molecular subtyping and patient stratification of PD by integrating genetic and clinical progression data (*e.g.*, PPMI and HBS2.0 cohorts) and nominate genes, proteins, and pathways for in-depth mechanistic studies in stem cell and other PD models.
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""")
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col1, col2, col3 = st.columns(3)
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with col2:
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if st.button("Predict with CIPHER"):
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st.switch_page("pages/predict.py")
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pages/predict.py
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@@ -188,7 +188,6 @@ with st.spinner('Computing predictions...'):
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# Add legend
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ax.legend(loc = 'upper right', fontsize = 10)
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ax.grid(alpha = 0.2)
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st.markdown(f"Out of 35,189 genes, the selected genes rank as follows:")
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selected_display_data['Rank'] = selected_display_data['Rank'].apply(lambda x: f"{x} (top {(100*x/target_nodes.shape[0]):.2f}% of predictions)")
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# Add legend
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ax.legend(loc = 'upper right', fontsize = 10)
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ax.grid(alpha = 0.2)
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st.markdown(f"Out of 35,189 genes, the selected genes rank as follows:")
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selected_display_data['Rank'] = selected_display_data['Rank'].apply(lambda x: f"{x} (top {(100*x/target_nodes.shape[0]):.2f}% of predictions)")
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