Drop conda support + bump v1.5.0
Browse files- .github/workflows/build.yml +0 -42
- demo/app.py +1 -1
- setup.py +1 -1
.github/workflows/build.yml
CHANGED
|
@@ -79,45 +79,3 @@ jobs:
|
|
| 79 |
- name: Test inference .nii
|
| 80 |
run: |
|
| 81 |
livermask --input samples --output results --verbose --vessels
|
| 82 |
-
|
| 83 |
-
conda:
|
| 84 |
-
needs: build
|
| 85 |
-
runs-on: ${{ matrix.os }}
|
| 86 |
-
strategy:
|
| 87 |
-
matrix:
|
| 88 |
-
os: [ windows-2019, ubuntu-20.04 ] #, macos-11 ]
|
| 89 |
-
python-version: [ 3.7 ]
|
| 90 |
-
steps:
|
| 91 |
-
- uses: conda-incubator/setup-miniconda@v2
|
| 92 |
-
with:
|
| 93 |
-
auto-update-conda: true
|
| 94 |
-
python-version: 3.7
|
| 95 |
-
|
| 96 |
-
- name: Download artifact
|
| 97 |
-
uses: actions/download-artifact@master
|
| 98 |
-
with:
|
| 99 |
-
name: "Python wheel"
|
| 100 |
-
|
| 101 |
-
- name: Install wheel
|
| 102 |
-
if: runner.os == 'Windows'
|
| 103 |
-
run: |
|
| 104 |
-
$TARGET = Resolve-Path "${{github.workspace}}/livermask-*.whl" | Select -ExpandProperty Path
|
| 105 |
-
echo $TARGET
|
| 106 |
-
pip3 install --find-links=${{github.workspace}} $TARGET
|
| 107 |
-
|
| 108 |
-
- name: Install wheel
|
| 109 |
-
if: runner.os != 'Windows'
|
| 110 |
-
run: pip3 install --find-links=${{github.workspace}} livermask-*.whl
|
| 111 |
-
|
| 112 |
-
- name: Download test sample
|
| 113 |
-
run: |
|
| 114 |
-
pip3 install gdown==4.4.0
|
| 115 |
-
mkdir samples
|
| 116 |
-
mkdir results
|
| 117 |
-
cd samples
|
| 118 |
-
gdown https://drive.google.com/uc?id=1shjSrFjS4PHE5sTku30PZTLPZpGu24o3
|
| 119 |
-
gdown https://drive.google.com/uc?id=1bNmls5o0Rxw5HvBF1IYnEzmpysYJaywN
|
| 120 |
-
|
| 121 |
-
- name: Test inference
|
| 122 |
-
run: |
|
| 123 |
-
livermask --input samples --output results --verbose --vessels
|
|
|
|
| 79 |
- name: Test inference .nii
|
| 80 |
run: |
|
| 81 |
livermask --input samples --output results --verbose --vessels
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
demo/app.py
CHANGED
|
@@ -40,7 +40,7 @@ def load_mesh(mesh_file_name):
|
|
| 40 |
if __name__ == "__main__":
|
| 41 |
demo = gr.Interface(
|
| 42 |
fn=load_mesh,
|
| 43 |
-
inputs=gr.UploadButton(label="Click to Upload a File",
|
| 44 |
outputs=gr.Model3D(clear_color=[0.0, 0.0, 0.0, 0.0], label="3D Model"),
|
| 45 |
title="livermask: Automatic Liver Parenchyma segmentation in CT",
|
| 46 |
description="Using pretrained deep learning model trained on the LiTS17 dataset",
|
|
|
|
| 40 |
if __name__ == "__main__":
|
| 41 |
demo = gr.Interface(
|
| 42 |
fn=load_mesh,
|
| 43 |
+
inputs=gr.UploadButton(label="Click to Upload a File", file_types=[".nii", ".nii.nz"], file_count="single"),
|
| 44 |
outputs=gr.Model3D(clear_color=[0.0, 0.0, 0.0, 0.0], label="3D Model"),
|
| 45 |
title="livermask: Automatic Liver Parenchyma segmentation in CT",
|
| 46 |
description="Using pretrained deep learning model trained on the LiTS17 dataset",
|
setup.py
CHANGED
|
@@ -10,7 +10,7 @@ with open('requirements.txt', 'r', encoding='utf-16', errors='ignore') as ff:
|
|
| 10 |
|
| 11 |
setup(
|
| 12 |
name='livermask',
|
| 13 |
-
version='1.
|
| 14 |
author="André Pedersen and Javier Pérez de Frutos",
|
| 15 |
author_email="[email protected]",
|
| 16 |
license='MIT',
|
|
|
|
| 10 |
|
| 11 |
setup(
|
| 12 |
name='livermask',
|
| 13 |
+
version='1.5.0',
|
| 14 |
author="André Pedersen and Javier Pérez de Frutos",
|
| 15 |
author_email="[email protected]",
|
| 16 |
license='MIT',
|