Dr-LLaVA / app.py
David Day
Update UI.
281d004 unverified
import argparse
import datetime
import hashlib
import json
import os
import time
import gradio as gr
import requests
from constants import LOGDIR
from conversation import (default_conversation, conv_templates,
SeparatorStyle)
from utils import (build_logger, server_error_msg)
logger = build_logger("gradio_web_server", "gradio_web_server.log")
from model_worker import ModelWorker
no_change_btn = gr.Button()
enable_btn = gr.Button(interactive=True)
disable_btn = gr.Button(interactive=False)
def get_conv_log_filename():
t = datetime.datetime.now()
name = os.path.join(LOGDIR, f"{t.year}-{t.month:02d}-{t.day:02d}-conv.json")
return name
get_window_url_params = """
function() {
const params = new URLSearchParams(window.location.search);
url_params = Object.fromEntries(params);
console.log(url_params);
return url_params;
}
"""
def load_demo(url_params, request: gr.Request):
logger.info(f"load_demo. ip: {request.client.host}. params: {url_params}")
global worker
dropdown_update = gr.Dropdown(visible=True)
worker = ModelWorker(model_path, None, model_name, True, lora_path)
state = default_conversation.copy()
return state, dropdown_update
def vote_last_response(state, vote_type, model_selector, request: gr.Request):
with open(get_conv_log_filename(), "a") as fout:
data = {
"tstamp": round(time.time(), 4),
"type": vote_type,
"model": model_selector,
"state": state.dict(),
"ip": request.client.host,
}
fout.write(json.dumps(data) + "\n")
def upvote_last_response(state, model_selector, request: gr.Request):
logger.info(f"upvote. ip: {request.client.host}")
vote_last_response(state, "upvote", model_selector, request)
return ("",) + (disable_btn,) * 3
def downvote_last_response(state, model_selector, request: gr.Request):
logger.info(f"downvote. ip: {request.client.host}")
vote_last_response(state, "downvote", model_selector, request)
return ("",) + (disable_btn,) * 3
def flag_last_response(state, model_selector, request: gr.Request):
logger.info(f"flag. ip: {request.client.host}")
vote_last_response(state, "flag", model_selector, request)
return ("",) + (disable_btn,) * 3
def regenerate(state, image_process_mode, request: gr.Request):
logger.info(f"regenerate. ip: {request.client.host}")
state.messages[-1][-1] = None
prev_human_msg = state.messages[-2]
if type(prev_human_msg[1]) in (tuple, list):
prev_human_msg[1] = (*prev_human_msg[1][:2], image_process_mode)
state.skip_next = False
return (state, state.to_gradio_chatbot(), "", None) + (disable_btn,) * 5
def clear_history(request: gr.Request):
logger.info(f"clear_history. ip: {request.client.host}")
state = default_conversation.copy()
return (state, state.to_gradio_chatbot(), "", None) + (disable_btn,) * 5
def add_text(state, text, image, image_process_mode, request: gr.Request):
logger.info(f"add_text. ip: {request.client.host}. len: {len(text)}")
if len(text) <= 0 and image is None:
state.skip_next = True
return (state, state.to_gradio_chatbot(), "", None) + (no_change_btn,) * 5
text = text[:1536] # Hard cut-off
if image is not None:
text = text[:1200] # Hard cut-off for images
if '<image>' not in text:
# text = '<Image><image></Image>' + text
text = text + '\n<image>'
text = (text, image, image_process_mode)
state = default_conversation.copy()
state.append_message(state.roles[0], text)
state.append_message(state.roles[1], None)
state.skip_next = False
return (state, state.to_gradio_chatbot(), "", None) + (disable_btn,) * 5
def http_bot(state, model_selector, temperature, top_p, max_new_tokens, request: gr.Request):
logger.info(f"http_bot. ip: {request.client.host}")
start_tstamp = time.time()
model_name = model_selector
if state.skip_next:
# This generate call is skipped due to invalid inputs
yield (state, state.to_gradio_chatbot()) + (no_change_btn,) * 5
return
if len(state.messages) == state.offset + 2:
# First round of conversation
if "llava" in model_name.lower():
if 'llama-2' in model_name.lower():
template_name = "llava_llama_2"
elif "mistral" in model_name.lower() or "mixtral" in model_name.lower():
if 'orca' in model_name.lower():
template_name = "mistral_orca"
elif 'hermes' in model_name.lower():
template_name = "chatml_direct"
else:
template_name = "mistral_instruct"
elif 'llava-v1.6-34b' in model_name.lower():
template_name = "chatml_direct"
elif "v1" in model_name.lower():
if 'mmtag' in model_name.lower():
template_name = "v1_mmtag"
elif 'plain' in model_name.lower() and 'finetune' not in model_name.lower():
template_name = "v1_mmtag"
else:
template_name = "llava_v1"
elif "mpt" in model_name.lower():
template_name = "mpt"
else:
if 'mmtag' in model_name.lower():
template_name = "v0_mmtag"
elif 'plain' in model_name.lower() and 'finetune' not in model_name.lower():
template_name = "v0_mmtag"
else:
template_name = "llava_v0"
elif "mpt" in model_name:
template_name = "mpt_text"
elif "llama-2" in model_name:
template_name = "llama_2"
else:
template_name = "vicuna_v1"
new_state = conv_templates[template_name].copy()
new_state.append_message(new_state.roles[0], state.messages[-2][1])
new_state.append_message(new_state.roles[1], None)
state = new_state
# Construct prompt
prompt = state.get_prompt()
all_images = state.get_images(return_pil=True)
all_image_hash = [hashlib.md5(image.tobytes()).hexdigest() for image in all_images]
for image, hash in zip(all_images, all_image_hash):
t = datetime.datetime.now()
filename = os.path.join(LOGDIR, "serve_images", f"{t.year}-{t.month:02d}-{t.day:02d}", f"{hash}.jpg")
if not os.path.isfile(filename):
os.makedirs(os.path.dirname(filename), exist_ok=True)
image.save(filename)
# Make requests
pload = {
"model": model_name,
"prompt": prompt,
"temperature": float(temperature),
"top_p": float(top_p),
"max_new_tokens": min(int(max_new_tokens), 1536),
"stop": state.sep if state.sep_style in [SeparatorStyle.SINGLE, SeparatorStyle.MPT] else state.sep2,
"images": f'List of {len(state.get_images())} images: {all_image_hash}',
}
logger.info(f"==== request ====\n{pload}")
pload['images'] = state.get_images()
state.messages[-1][-1] = "β–Œ"
yield (state, state.to_gradio_chatbot()) + (disable_btn,) * 5
try:
# Stream output
for chunk in worker.generate_stream_gate(pload):
if chunk:
data = json.loads(chunk.decode())
if data["error_code"] == 0:
output = data["text"][len(prompt):].strip()
state.messages[-1][-1] = output + "β–Œ"
yield (state, state.to_gradio_chatbot()) + (disable_btn,) * 5
else:
output = data["text"] + f" (error_code: {data['error_code']})"
state.messages[-1][-1] = output
yield (state, state.to_gradio_chatbot()) + (disable_btn, disable_btn, disable_btn, enable_btn, enable_btn)
return
time.sleep(0.03)
except requests.exceptions.RequestException as e:
state.messages[-1][-1] = server_error_msg
yield (state, state.to_gradio_chatbot()) + (disable_btn, disable_btn, disable_btn, enable_btn, enable_btn)
return
state.messages[-1][-1] = state.messages[-1][-1][:-1]
yield (state, state.to_gradio_chatbot()) + (enable_btn,) * 5
finish_tstamp = time.time()
logger.info(f"{output}")
with open(get_conv_log_filename(), "a") as fout:
data = {
"tstamp": round(finish_tstamp, 4),
"type": "chat",
"model": model_name,
"start": round(start_tstamp, 4),
"finish": round(finish_tstamp, 4),
"state": state.dict(),
"images": all_image_hash,
"ip": request.client.host,
}
fout.write(json.dumps(data) + "\n")
title_markdown = ("""
# Dr-LLaVA: Visual Instruction Tuning with Symbolic Clinical Grounding
[[Project Page](https://XXXXX)] [[Code](https://github.com/AlaaLab/Dr-LLaVA)] | πŸ“š [[Dr-LLaVA](https://arxiv.org/abs/2405.19567)]]
""")
tos_markdown = ("""
This demo is intended for research purposes only and not for medical use.
The model has not been fine-tuned on non-medical images.
""")
learn_more_markdown = ("""
### License
The service is a research preview intended for non-commercial use only, subject to the model [License](https://github.com/facebookresearch/llama/blob/main/MODEL_CARD.md) of LLaMA, [Terms of Use](https://openai.com/policies/terms-of-use) of the data generated by OpenAI, and [Privacy Practices](https://chrome.google.com/webstore/detail/sharegpt-share-your-chatg/daiacboceoaocpibfodeljbdfacokfjb) of ShareGPT. Please contact us if you find any potential violation.
""")
block_css = """
#buttons button {
min-width: min(120px,100%);
}
"""
def build_demo(cur_dir=None, concurrency_count=10):
textbox = gr.Textbox(show_label=False, placeholder="Enter text and press ENTER", container=False)
with gr.Blocks(title="LLaVA", theme=gr.themes.Default(), css=block_css) as demo:
state = gr.State()
gr.Markdown(title_markdown)
with gr.Row():
with gr.Column(scale=2):
# add a description
gr.Markdown("""Shenghuan Sun, Gregory Goldgof, Alex Schubert, Zhiqing Sun, Atul Butte, Ahmed Alaa
Demo Creator: [David W. Day](https://github.com/daviddaytw)
This is the demo for Dr-LLaVA: a conversational vision-language model for diagnosing blood cancer using Bone Marrow Aspirate images.
**Instructions:**
- Drop a single image from a bone marrow aspirate whole slide image taken at 40x.</li>
""")
# Replace 'path_to_image' with the path to your image file
gr.Image(value="https://davidday.tw/wp-content/uploads/2024/08/Dr-LLa-VA-Fig-1.jpg",
width=600, interactive=False, type="pil")
with gr.Column(scale=3):
with gr.Row(elem_id="model_selector_row"):
model_selector = gr.Dropdown(
choices=models,
value=models[0] if len(models) > 0 else "",
interactive=True,
show_label=False,
container=False)
imagebox = gr.Image(type="pil")
image_process_mode = gr.Radio(
["Crop", "Resize", "Pad", "Default"],
value="Default",
label="Preprocess for non-square image", visible=False)
if cur_dir is None:
cur_dir = os.path.dirname(os.path.abspath(__file__))
gr.Examples(examples=[
[f"{cur_dir}/examples/example1.jpeg", "Can you assess if these pathology images are suitable for identifying cancer upon inspection?"],
[f"{cur_dir}/examples/example2.jpeg", "Are you able to recognize the probable illness in the image patch?"],
], inputs=[imagebox, textbox])
with gr.Accordion("Parameters", open=False) as parameter_row:
temperature = gr.Slider(minimum=0.0, maximum=1.0, value=0.2, step=0.1, interactive=True, label="Temperature",)
top_p = gr.Slider(minimum=0.0, maximum=1.0, value=0.7, step=0.1, interactive=True, label="Top P",)
max_output_tokens = gr.Slider(minimum=0, maximum=1024, value=512, step=64, interactive=True, label="Max output tokens",)
with gr.Column(scale=6):
chatbot = gr.Chatbot(
elem_id="chatbot",
label="LLaVA Chatbot",
height=470,
layout="panel",
)
with gr.Row():
with gr.Column(scale=8):
textbox.render()
with gr.Column(scale=1, min_width=50):
submit_btn = gr.Button(value="Send", variant="primary")
with gr.Row(elem_id="buttons") as button_row:
upvote_btn = gr.Button(value="πŸ‘ Upvote", interactive=False)
downvote_btn = gr.Button(value="πŸ‘Ž Downvote", interactive=False)
flag_btn = gr.Button(value="⚠️ Flag", interactive=False)
#stop_btn = gr.Button(value="⏹️ Stop Generation", interactive=False)
regenerate_btn = gr.Button(value="πŸ”„ Regenerate", interactive=False)
clear_btn = gr.Button(value="πŸ—‘οΈ Clear", interactive=False)
gr.Markdown(tos_markdown)
gr.Markdown(learn_more_markdown)
url_params = gr.JSON(visible=False)
# Register listeners
btn_list = [upvote_btn, downvote_btn, flag_btn, regenerate_btn, clear_btn]
upvote_btn.click(
upvote_last_response,
[state, model_selector],
[textbox, upvote_btn, downvote_btn, flag_btn]
)
downvote_btn.click(
downvote_last_response,
[state, model_selector],
[textbox, upvote_btn, downvote_btn, flag_btn]
)
flag_btn.click(
flag_last_response,
[state, model_selector],
[textbox, upvote_btn, downvote_btn, flag_btn]
)
regenerate_btn.click(
regenerate,
[state, image_process_mode],
[state, chatbot, textbox, imagebox] + btn_list
).then(
http_bot,
[state, model_selector, temperature, top_p, max_output_tokens],
[state, chatbot] + btn_list,
concurrency_limit=concurrency_count
)
clear_btn.click(
clear_history,
None,
[state, chatbot, textbox, imagebox] + btn_list,
queue=False
)
textbox.submit(
add_text,
[state, textbox, imagebox, image_process_mode],
[state, chatbot, textbox, imagebox] + btn_list,
queue=False
).then(
http_bot,
[state, model_selector, temperature, top_p, max_output_tokens],
[state, chatbot] + btn_list,
concurrency_limit=concurrency_count
)
submit_btn.click(
add_text,
[state, textbox, imagebox, image_process_mode],
[state, chatbot, textbox, imagebox] + btn_list
).then(
http_bot,
[state, model_selector, temperature, top_p, max_output_tokens],
[state, chatbot] + btn_list,
concurrency_limit=concurrency_count
)
demo.load(
load_demo,
[url_params],
[state, model_selector],
js=get_window_url_params
)
return demo
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--host", type=str, default="0.0.0.0")
parser.add_argument("--port", type=int)
parser.add_argument("--concurrency-count", type=int, default=16)
parser.add_argument("--share", action="store_true")
args = parser.parse_args()
logger.info(f"args: {args}")
models = ['llava-rlhf-13b-v1.5-336']
model_path = 'daviddaytw/Dr-LLaVA-sft'
model_name = 'llava-rlhf-13b-v1.5-336'
lora_path = 'daviddaytw/Dr-LLaVA-lora-adapter'
demo = build_demo(concurrency_count=args.concurrency_count)
demo.queue(
api_open=False
).launch(
server_name=args.host,
server_port=args.port,
share=args.share
)