Dr-LLaVA / app.py
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import argparse
import datetime
import hashlib
import json
import os
import subprocess
import sys
import time
import gradio as gr
import requests
from constants import LOGDIR
from conversation import (default_conversation, conv_templates,
SeparatorStyle)
from utils import (build_logger, server_error_msg,
violates_moderation, moderation_msg)
logger = build_logger("gradio_web_server", "gradio_web_server.log")
headers = {"User-Agent": "LLaVA Client"}
no_change_btn = gr.Button()
enable_btn = gr.Button(interactive=True)
disable_btn = gr.Button(interactive=False)
priority = {
"vicuna-13b": "aaaaaaa",
"koala-13b": "aaaaaab",
}
def get_conv_log_filename():
t = datetime.datetime.now()
name = os.path.join(LOGDIR, f"{t.year}-{t.month:02d}-{t.day:02d}-conv.json")
return name
def get_model_list():
ret = requests.post(args.controller_url + "/refresh_all_workers")
assert ret.status_code == 200
ret = requests.post(args.controller_url + "/list_models")
models = ret.json()["models"]
models.sort(key=lambda x: priority.get(x, x))
logger.info(f"Models: {models}")
return models
get_window_url_params = """
function() {
const params = new URLSearchParams(window.location.search);
url_params = Object.fromEntries(params);
console.log(url_params);
return url_params;
}
"""
def load_demo(url_params, request: gr.Request):
logger.info(f"load_demo. ip: {request.client.host}. params: {url_params}")
dropdown_update = gr.Dropdown(visible=True)
if "model" in url_params:
model = url_params["model"]
if model in models:
dropdown_update = gr.Dropdown(value=model, visible=True)
state = default_conversation.copy()
return state, dropdown_update
def load_demo_refresh_model_list(request: gr.Request):
logger.info(f"load_demo. ip: {request.client.host}")
models = get_model_list()
state = default_conversation.copy()
dropdown_update = gr.Dropdown(
choices=models,
value=models[0] if len(models) > 0 else ""
)
return state, dropdown_update
def vote_last_response(state, vote_type, model_selector, request: gr.Request):
with open(get_conv_log_filename(), "a") as fout:
data = {
"tstamp": round(time.time(), 4),
"type": vote_type,
"model": model_selector,
"state": state.dict(),
"ip": request.client.host,
}
fout.write(json.dumps(data) + "\n")
def upvote_last_response(state, model_selector, request: gr.Request):
logger.info(f"upvote. ip: {request.client.host}")
vote_last_response(state, "upvote", model_selector, request)
return ("",) + (disable_btn,) * 3
def downvote_last_response(state, model_selector, request: gr.Request):
logger.info(f"downvote. ip: {request.client.host}")
vote_last_response(state, "downvote", model_selector, request)
return ("",) + (disable_btn,) * 3
def flag_last_response(state, model_selector, request: gr.Request):
logger.info(f"flag. ip: {request.client.host}")
vote_last_response(state, "flag", model_selector, request)
return ("",) + (disable_btn,) * 3
def regenerate(state, image_process_mode, request: gr.Request):
logger.info(f"regenerate. ip: {request.client.host}")
state.messages[-1][-1] = None
prev_human_msg = state.messages[-2]
if type(prev_human_msg[1]) in (tuple, list):
prev_human_msg[1] = (*prev_human_msg[1][:2], image_process_mode)
state.skip_next = False
return (state, state.to_gradio_chatbot(), "", None) + (disable_btn,) * 5
def clear_history(request: gr.Request):
logger.info(f"clear_history. ip: {request.client.host}")
state = default_conversation.copy()
return (state, state.to_gradio_chatbot(), "", None) + (disable_btn,) * 5
def add_text(state, text, image, image_process_mode, request: gr.Request):
logger.info(f"add_text. ip: {request.client.host}. len: {len(text)}")
if len(text) <= 0 and image is None:
state.skip_next = True
return (state, state.to_gradio_chatbot(), "", None) + (no_change_btn,) * 5
if args.moderate:
flagged = violates_moderation(text)
if flagged:
state.skip_next = True
return (state, state.to_gradio_chatbot(), moderation_msg, None) + (
no_change_btn,) * 5
text = text[:1536] # Hard cut-off
if image is not None:
text = text[:1200] # Hard cut-off for images
if '<image>' not in text:
# text = '<Image><image></Image>' + text
text = text + '\n<image>'
text = (text, image, image_process_mode)
state = default_conversation.copy()
state.append_message(state.roles[0], text)
state.append_message(state.roles[1], None)
state.skip_next = False
return (state, state.to_gradio_chatbot(), "", None) + (disable_btn,) * 5
def http_bot(state, model_selector, temperature, top_p, max_new_tokens, request: gr.Request):
logger.info(f"http_bot. ip: {request.client.host}")
start_tstamp = time.time()
model_name = model_selector
if state.skip_next:
# This generate call is skipped due to invalid inputs
yield (state, state.to_gradio_chatbot()) + (no_change_btn,) * 5
return
if len(state.messages) == state.offset + 2:
# First round of conversation
if "llava" in model_name.lower():
if 'llama-2' in model_name.lower():
template_name = "llava_llama_2"
elif "mistral" in model_name.lower() or "mixtral" in model_name.lower():
if 'orca' in model_name.lower():
template_name = "mistral_orca"
elif 'hermes' in model_name.lower():
template_name = "chatml_direct"
else:
template_name = "mistral_instruct"
elif 'llava-v1.6-34b' in model_name.lower():
template_name = "chatml_direct"
elif "v1" in model_name.lower():
if 'mmtag' in model_name.lower():
template_name = "v1_mmtag"
elif 'plain' in model_name.lower() and 'finetune' not in model_name.lower():
template_name = "v1_mmtag"
else:
template_name = "llava_v1"
elif "mpt" in model_name.lower():
template_name = "mpt"
else:
if 'mmtag' in model_name.lower():
template_name = "v0_mmtag"
elif 'plain' in model_name.lower() and 'finetune' not in model_name.lower():
template_name = "v0_mmtag"
else:
template_name = "llava_v0"
elif "mpt" in model_name:
template_name = "mpt_text"
elif "llama-2" in model_name:
template_name = "llama_2"
else:
template_name = "vicuna_v1"
new_state = conv_templates[template_name].copy()
new_state.append_message(new_state.roles[0], state.messages[-2][1])
new_state.append_message(new_state.roles[1], None)
state = new_state
# Query worker address
controller_url = args.controller_url
ret = requests.post(controller_url + "/get_worker_address",
json={"model": model_name})
worker_addr = ret.json()["address"]
logger.info(f"model_name: {model_name}, worker_addr: {worker_addr}")
# No available worker
if worker_addr == "":
state.messages[-1][-1] = server_error_msg
yield (state, state.to_gradio_chatbot(), disable_btn, disable_btn, disable_btn, enable_btn, enable_btn)
return
# Construct prompt
prompt = state.get_prompt()
all_images = state.get_images(return_pil=True)
all_image_hash = [hashlib.md5(image.tobytes()).hexdigest() for image in all_images]
for image, hash in zip(all_images, all_image_hash):
t = datetime.datetime.now()
filename = os.path.join(LOGDIR, "serve_images", f"{t.year}-{t.month:02d}-{t.day:02d}", f"{hash}.jpg")
if not os.path.isfile(filename):
os.makedirs(os.path.dirname(filename), exist_ok=True)
image.save(filename)
# Make requests
pload = {
"model": model_name,
"prompt": prompt,
"temperature": float(temperature),
"top_p": float(top_p),
"max_new_tokens": min(int(max_new_tokens), 1536),
"stop": state.sep if state.sep_style in [SeparatorStyle.SINGLE, SeparatorStyle.MPT] else state.sep2,
"images": f'List of {len(state.get_images())} images: {all_image_hash}',
}
logger.info(f"==== request ====\n{pload}")
pload['images'] = state.get_images()
state.messages[-1][-1] = "β–Œ"
yield (state, state.to_gradio_chatbot()) + (disable_btn,) * 5
try:
# Stream output
response = requests.post(worker_addr + "/worker_generate_stream",
headers=headers, json=pload, stream=True, timeout=10)
for chunk in response.iter_lines(decode_unicode=False, delimiter=b"\0"):
if chunk:
data = json.loads(chunk.decode())
if data["error_code"] == 0:
output = data["text"][len(prompt):].strip()
state.messages[-1][-1] = output + "β–Œ"
yield (state, state.to_gradio_chatbot()) + (disable_btn,) * 5
else:
output = data["text"] + f" (error_code: {data['error_code']})"
state.messages[-1][-1] = output
yield (state, state.to_gradio_chatbot()) + (disable_btn, disable_btn, disable_btn, enable_btn, enable_btn)
return
time.sleep(0.03)
except requests.exceptions.RequestException as e:
state.messages[-1][-1] = server_error_msg
yield (state, state.to_gradio_chatbot()) + (disable_btn, disable_btn, disable_btn, enable_btn, enable_btn)
return
state.messages[-1][-1] = state.messages[-1][-1][:-1]
yield (state, state.to_gradio_chatbot()) + (enable_btn,) * 5
finish_tstamp = time.time()
logger.info(f"{output}")
with open(get_conv_log_filename(), "a") as fout:
data = {
"tstamp": round(finish_tstamp, 4),
"type": "chat",
"model": model_name,
"start": round(start_tstamp, 4),
"finish": round(finish_tstamp, 4),
"state": state.dict(),
"images": all_image_hash,
"ip": request.client.host,
}
fout.write(json.dumps(data) + "\n")
title_markdown = ("""
# Dr-LLaVA: Visual Instruction Tuning with Symbolic Clinical Grounding
[[Project Page](https://XXXXX)] [[Code](https://github.com/AlaaLab/Dr-LLaVA)] | πŸ“š [[Dr-LLaVA](https://arxiv.org/abs/2405.19567)]]
""")
tos_markdown = ("""
User agrees to the following terms of use:
1. The service is a research preview intended for non-commercial use only.
2. The service is provided "as is" without warranty of any kind.
""")
learn_more_markdown = ("""
### License
The service is a research preview intended for non-commercial use only, subject to the model [License](https://github.com/facebookresearch/llama/blob/main/MODEL_CARD.md) of LLaMA, [Terms of Use](https://openai.com/policies/terms-of-use) of the data generated by OpenAI, and [Privacy Practices](https://chrome.google.com/webstore/detail/sharegpt-share-your-chatg/daiacboceoaocpibfodeljbdfacokfjb) of ShareGPT. Please contact us if you find any potential violation.
""")
block_css = """
#buttons button {
min-width: min(120px,100%);
}
"""
def build_demo(embed_mode, cur_dir=None, concurrency_count=10):
textbox = gr.Textbox(show_label=False, placeholder="Enter text and press ENTER", container=False)
with gr.Blocks(title="LLaVA", theme=gr.themes.Default(), css=block_css) as demo:
state = gr.State()
if not embed_mode:
gr.Markdown(title_markdown)
with gr.Row():
with gr.Column(scale=2):
# add a description
gr.Markdown("""<p style='text-align: center'> Shenghuan Sun, Gregory Goldgof, Alex Schubert, Zhiqing Sun, Atul Butte, Ahmed Alaa <br>
This is the demo for Dr-LLaVA. So far it could only be used for H&E stained Bone Marrow Aspirate images application.</p>
<b>Tips for using this demo:</b>
<ul>
<li>Drop a single image from a bone marrow aspirate whole slide image taken at 40x.</li>
</ul>
""")
# Replace 'path_to_image' with the path to your image file
gr.Image(value="https://i.postimg.cc/tJzyq5Dh/Dr-LLa-VA-Fig-1.png",
width=600, interactive=False, type="pil")
with gr.Column(scale=3):
with gr.Row(elem_id="model_selector_row"):
model_selector = gr.Dropdown(
choices=models,
value=models[0] if len(models) > 0 else "",
interactive=True,
show_label=False,
container=False)
imagebox = gr.Image(type="pil")
image_process_mode = gr.Radio(
["Crop", "Resize", "Pad", "Default"],
value="Default",
label="Preprocess for non-square image", visible=False)
if cur_dir is None:
cur_dir = os.path.dirname(os.path.abspath(__file__))
gr.Examples(examples=[
[f"{cur_dir}/examples/example1.jpeg", "Can you assess if these pathology images are suitable for identifying cancer upon inspection?"],
[f"{cur_dir}/examples/example2.jpeg", "Are you able to recognize the probable illness in the image patch?"],
], inputs=[imagebox, textbox])
with gr.Accordion("Parameters", open=False) as parameter_row:
temperature = gr.Slider(minimum=0.0, maximum=1.0, value=0.2, step=0.1, interactive=True, label="Temperature",)
top_p = gr.Slider(minimum=0.0, maximum=1.0, value=0.7, step=0.1, interactive=True, label="Top P",)
max_output_tokens = gr.Slider(minimum=0, maximum=1024, value=512, step=64, interactive=True, label="Max output tokens",)
with gr.Column(scale=6):
chatbot = gr.Chatbot(
elem_id="chatbot",
label="LLaVA Chatbot",
height=470,
layout="panel",
)
with gr.Row():
with gr.Column(scale=8):
textbox.render()
with gr.Column(scale=1, min_width=50):
submit_btn = gr.Button(value="Send", variant="primary")
with gr.Row(elem_id="buttons") as button_row:
upvote_btn = gr.Button(value="πŸ‘ Upvote", interactive=False)
downvote_btn = gr.Button(value="πŸ‘Ž Downvote", interactive=False)
flag_btn = gr.Button(value="⚠️ Flag", interactive=False)
#stop_btn = gr.Button(value="⏹️ Stop Generation", interactive=False)
regenerate_btn = gr.Button(value="πŸ”„ Regenerate", interactive=False)
clear_btn = gr.Button(value="πŸ—‘οΈ Clear", interactive=False)
if not embed_mode:
gr.Markdown(tos_markdown)
gr.Markdown(learn_more_markdown)
url_params = gr.JSON(visible=False)
# Register listeners
btn_list = [upvote_btn, downvote_btn, flag_btn, regenerate_btn, clear_btn]
upvote_btn.click(
upvote_last_response,
[state, model_selector],
[textbox, upvote_btn, downvote_btn, flag_btn]
)
downvote_btn.click(
downvote_last_response,
[state, model_selector],
[textbox, upvote_btn, downvote_btn, flag_btn]
)
flag_btn.click(
flag_last_response,
[state, model_selector],
[textbox, upvote_btn, downvote_btn, flag_btn]
)
regenerate_btn.click(
regenerate,
[state, image_process_mode],
[state, chatbot, textbox, imagebox] + btn_list
).then(
http_bot,
[state, model_selector, temperature, top_p, max_output_tokens],
[state, chatbot] + btn_list,
concurrency_limit=concurrency_count
)
clear_btn.click(
clear_history,
None,
[state, chatbot, textbox, imagebox] + btn_list,
queue=False
)
textbox.submit(
add_text,
[state, textbox, imagebox, image_process_mode],
[state, chatbot, textbox, imagebox] + btn_list,
queue=False
).then(
http_bot,
[state, model_selector, temperature, top_p, max_output_tokens],
[state, chatbot] + btn_list,
concurrency_limit=concurrency_count
)
submit_btn.click(
add_text,
[state, textbox, imagebox, image_process_mode],
[state, chatbot, textbox, imagebox] + btn_list
).then(
http_bot,
[state, model_selector, temperature, top_p, max_output_tokens],
[state, chatbot] + btn_list,
concurrency_limit=concurrency_count
)
if args.model_list_mode == "once":
demo.load(
load_demo,
[url_params],
[state, model_selector],
js=get_window_url_params
)
elif args.model_list_mode == "reload":
demo.load(
load_demo_refresh_model_list,
None,
[state, model_selector],
queue=False
)
else:
raise ValueError(f"Unknown model list mode: {args.model_list_mode}")
return demo
def start_controller():
logger.info("Starting the controller")
controller_command = [
"python",
"-m",
"controller",
"--host",
"0.0.0.0",
"--port",
"10000",
]
return subprocess.Popen(controller_command)
def start_worker():
logger.info(f"Starting the model worker")
worker_command = [
"python",
"-m",
"model_worker",
"--host",
"0.0.0.0",
"--controller",
"http://localhost:10000",
"--load-bf16",
"--model-name",
"llava-rlhf-13b-v1.5-336",
"--model-path",
"daviddaytw/Dr-LLaVA-sft",
"--lora-path",
"daviddaytw/Dr-LLaVA-lora-adapter",
]
return subprocess.Popen(worker_command)
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument("--host", type=str, default="0.0.0.0")
parser.add_argument("--port", type=int)
parser.add_argument("--controller-url", type=str, default="http://localhost:10000")
parser.add_argument("--concurrency-count", type=int, default=16)
parser.add_argument(
"--model-list-mode", type=str, default="reload", choices=["once", "reload"]
)
parser.add_argument("--share", action="store_true")
parser.add_argument("--moderate", action="store_true")
parser.add_argument("--embed", action="store_true")
args = parser.parse_args()
return args
def start_demo(args):
demo = build_demo(args.embed)
demo.queue(
concurrency_count=args.concurrency_count, status_update_rate=10, api_open=False
).launch(server_name=args.host, server_port=args.port, share=args.share)
if __name__ == "__main__":
args = get_args()
logger.info(f"args: {args}")
controller_proc = start_controller()
worker_proc = start_worker()
# Wait for worker and controller to start
time.sleep(10)
exit_status = 0
try:
start_demo(args)
except Exception as e:
print(e)
exit_status = 1
finally:
worker_proc.kill()
controller_proc.kill()
sys.exit(exit_status)