Update app.py

app.py

@@ -16,7 +16,7 @@ urllib3.disable_warnings(urllib3.exceptions.InsecureRequestWarning)
 
 st.set_page_config(layout='wide')
 st.sidebar.title('🔮 GenPro2')
-st.sidebar.write('GenPro2 is an end-to-end protein sequence generator, structure predictor, and analysis that uses ESMFold and the ESM-2 language model | beta v2.12')
+st.sidebar.write('GenPro2 is an end-to-end protein sequence generator, structure predictor, and analysis that uses [ESMFold](https://esmatlas.com/explore?at=1%2C1%2C21.999999344348925) and the ESM-2 language model | beta v2.12')
 
 def generate_sequence_from_words(words, length):
     seed = ' '.join(words).encode('utf-8')
@@ -25,14 +25,33 @@ def generate_sequence_from_words(words, length):
     return ''.join(random.choice(amino_acids) for _ in range(length))
 
 def render_mol(pdb):
-    pdbview = py3Dmol.view(width=800, height=500)
-    pdbview.addModel(pdb, 'pdb')
-    pdbview.setStyle({'cartoon': {'color': 'spectrum'}})
-    pdbview.setBackgroundColor('white')
-    pdbview.zoomTo()
-    pdbview.zoom(2, 800)
-    pdbview.spin(True)
-    showmol(pdbview, height=500, width=800)
+    viewer = py3Dmol.view(width='100%', height='400px')
+    viewer.addModel(pdb, 'pdb')
+    viewer.setStyle({'cartoon': {'color': 'spectrum'}})
+    viewer.setBackgroundColor('white')
+    viewer.zoomTo()
+    viewer.zoom(0.8)  # Slightly zoomed out view
+    viewer.spin(True)
+    viewer.render()
+    
+    # Responsive design for mobile
+    st.markdown("""
+    <style>
+    .stmol-container {
+        width: 100% !important;
+        height: 400px !important;
+        max-width: 800px;
+        margin: 0 auto;
+    }
+    @media (max-width: 600px) {
+        .stmol-container {
+            height: 300px !important;
+        }
+    }
+    </style>
+    """, unsafe_allow_html=True)
+    
+    showmol(viewer, height=400, width=None)
 
 def perform_blast_analysis(sequence):
     st.subheader('Protein Analysis')
@@ -40,7 +59,7 @@ def perform_blast_analysis(sequence):
         progress_bar = st.progress(0)
         for i in range(100):
             progress_bar.progress(i + 1)
-            time.sleep(0.4)  # Analysis time
+            time.sleep(0.9)  # Analysis time
         
         try:
             record = SeqRecord(Seq(sequence), id='random_protein')
@@ -61,7 +80,7 @@ def perform_blast_analysis(sequence):
                 identity_percentage = (hsp.identities / hsp.align_length) * 100
                 
                 st.write(f"**Top Match:** {protein_name}")
-                st.write(f"**Organism:** {organism}")
+                st.write(f"**UniProt ID:** {organism}")
                 st.write(f"**Sequence Identity Match:** {identity_percentage:.2f}%")
                 
                 # Fetch protein function (if available)
@@ -209,7 +228,7 @@ if st.session_state.structure_info:
    
     1. Click the 'analyze protein' button to search the [BLAST](https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome) protein database and see if your protein matches any known sequences.  The sequence identity will show how close your sequence matches. *Note this can take several minutes
     2. Download your protein data and visit the [Protein Data Bank (PDB)](https://www.rcsb.org/) to match your protein structure against known protein structures.
-    3. If you think you've discovered a new and useful protein for humans message us!
+    3. If you think you've discovered a unique and useful protein share it with the world on social media!
 
   
     **Remember, this folding is based on randomly generated sequences. Interpret the results with caution.