Update PFCapp.qmd

PFCapp.qmd

@@ -59,7 +59,7 @@ Spatial data
 #| message: false
 
 library(ggplot2)
-library(scCustomize)
+#library(scCustomize)
 library(shiny)
 library(rgl)
 #library(wholebrain)
@@ -96,19 +96,19 @@ plotOutput('gene_plot')
 #| context: server
 
 output$cluster_plot <- renderPlot({
-  DimPlot_scCustom(
-    seurat_object = Adult.Ex,
+  DimPlot(
+    Adult.Ex,
     reduction = 'umap',
     group.by = input$cluster,
-    colors_use = col_cluster[[input$cluster]],
+    cols = col_cluster[[input$cluster]],
     label = T
   ) +
     coord_fixed()
 })
 
 output$gene_plot <- renderPlot({
-  FeaturePlot_scCustom(
-    seurat_object = Adult.Ex,
+  FeaturePlot(
+    Adult.Ex,
     features = input$gene) +
     coord_fixed()
 })