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FROM satijalab/seurat:4.3.0
WORKDIR /code
RUN apt-get update && apt-get install -y --no-install-recommends \
pandoc \
pandoc-citeproc \
curl \
gdebi-core \
&& rm -rf /var/lib/apt/lists/*
# Install stable packages from CRAN
RUN install2.r --error \
ggExtra \
shiny \
jsonlite \
ggplot2 \
htmltools \
remotes \
renv \
knitr \
rmarkdown \
quarto \
rgl \
rjson \
ggdark \
viridis \
dplyr \
waiter
# Install development packages from GitHub
RUN installGithub.r \
rstudio/bslib \
rstudio/httpuv \
thomasp85/patchwork
RUN curl -LO https://quarto.org/download/latest/quarto-linux-amd64.deb
RUN gdebi --non-interactive quarto-linux-amd64.deb
RUN useradd -m -u 1000 user
USER user
ENV HOME=/home/user \
PATH=/home/user/.local/bin:$PATH
WORKDIR $HOME/app
COPY --chown=user . $HOME/app
CMD ["quarto", "serve", "PFCapp.qmd", "--port", "7860", "--host", "0.0.0.0"]
#CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]
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