Update app.py
Browse files
app.py
CHANGED
@@ -6,6 +6,12 @@ import gradio as gr
|
|
6 |
from typing import List, Dict
|
7 |
from concurrent.futures import ThreadPoolExecutor
|
8 |
import hashlib
|
|
|
|
|
|
|
|
|
|
|
|
|
9 |
|
10 |
# Persistent directories
|
11 |
persistent_dir = "/data/hf_cache"
|
@@ -24,18 +30,46 @@ def file_hash(path: str) -> str:
|
|
24 |
with open(path, "rb") as f:
|
25 |
return hashlib.md5(f.read()).hexdigest()
|
26 |
|
27 |
-
def
|
28 |
-
"""Extract text from
|
29 |
try:
|
30 |
text_chunks = []
|
31 |
with pdfplumber.open(file_path) as pdf:
|
32 |
-
for page in pdf.pages:
|
33 |
page_text = page.extract_text() or ""
|
34 |
text_chunks.append(page_text.strip())
|
35 |
return "\n".join(text_chunks)
|
36 |
except Exception:
|
37 |
return ""
|
38 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
39 |
def convert_file_to_text(file_path: str, file_type: str) -> str:
|
40 |
"""Convert supported file types to text, caching results."""
|
41 |
try:
|
@@ -58,6 +92,8 @@ def convert_file_to_text(file_path: str, file_type: str) -> str:
|
|
58 |
text = ""
|
59 |
|
60 |
if text:
|
|
|
|
|
61 |
with open(cache_path, "w", encoding="utf-8") as f:
|
62 |
f.write(text)
|
63 |
return text
|
@@ -149,7 +185,7 @@ def create_ui():
|
|
149 |
def analyze(message: str, history: List[dict], files: List):
|
150 |
"""Handle analysis and return results."""
|
151 |
history.append({"role": "user", "content": message})
|
152 |
-
history.append({"role": "assistant", "content": "⏳
|
153 |
yield history, None
|
154 |
|
155 |
extracted_text = ""
|
@@ -161,17 +197,22 @@ def create_ui():
|
|
161 |
extracted_text = "\n".join(sanitize_utf8(r) for r in results if r)
|
162 |
file_hash_value = file_hash(files[0].name) if files else ""
|
163 |
|
164 |
-
history.pop() # Remove "
|
|
|
|
|
|
|
165 |
report_path = os.path.join(report_dir, f"{file_hash_value}_report.txt") if file_hash_value else None
|
166 |
|
167 |
try:
|
168 |
response = analyze_medical_records(extracted_text)
|
|
|
169 |
history.append({"role": "assistant", "content": response})
|
170 |
if report_path:
|
171 |
with open(report_path, "w", encoding="utf-8") as f:
|
172 |
f.write(response)
|
173 |
yield history, report_path if report_path and os.path.exists(report_path) else None
|
174 |
except Exception as e:
|
|
|
175 |
history.append({"role": "assistant", "content": f"❌ Error: {str(e)}"})
|
176 |
yield history, None
|
177 |
|
|
|
6 |
from typing import List, Dict
|
7 |
from concurrent.futures import ThreadPoolExecutor
|
8 |
import hashlib
|
9 |
+
import multiprocessing
|
10 |
+
from functools import partial
|
11 |
+
import logging
|
12 |
+
|
13 |
+
# Suppress pdfplumber CropBox warnings
|
14 |
+
logging.getLogger("pdfplumber").setLevel(logging.ERROR)
|
15 |
|
16 |
# Persistent directories
|
17 |
persistent_dir = "/data/hf_cache"
|
|
|
30 |
with open(path, "rb") as f:
|
31 |
return hashlib.md5(f.read()).hexdigest()
|
32 |
|
33 |
+
def extract_page_range(file_path: str, start_page: int, end_page: int) -> str:
|
34 |
+
"""Extract text from a range of PDF pages."""
|
35 |
try:
|
36 |
text_chunks = []
|
37 |
with pdfplumber.open(file_path) as pdf:
|
38 |
+
for page in pdf.pages[start_page:end_page]:
|
39 |
page_text = page.extract_text() or ""
|
40 |
text_chunks.append(page_text.strip())
|
41 |
return "\n".join(text_chunks)
|
42 |
except Exception:
|
43 |
return ""
|
44 |
|
45 |
+
def extract_all_pages(file_path: str) -> str:
|
46 |
+
"""Extract text from all pages of a PDF using parallel processing."""
|
47 |
+
try:
|
48 |
+
with pdfplumber.open(file_path) as pdf:
|
49 |
+
total_pages = len(pdf.pages)
|
50 |
+
|
51 |
+
if total_pages == 0:
|
52 |
+
return ""
|
53 |
+
|
54 |
+
# Use 4 processes (adjust based on CPU cores)
|
55 |
+
num_processes = min(4, multiprocessing.cpu_count())
|
56 |
+
pages_per_process = max(1, total_pages // num_processes)
|
57 |
+
|
58 |
+
# Create page ranges for parallel processing
|
59 |
+
ranges = [(i * pages_per_process, min((i + 1) * pages_per_process, total_pages))
|
60 |
+
for i in range(num_processes)]
|
61 |
+
if ranges[-1][1] != total_pages:
|
62 |
+
ranges[-1] = (ranges[-1][0], total_pages)
|
63 |
+
|
64 |
+
# Process page ranges in parallel
|
65 |
+
with multiprocessing.Pool(processes=num_processes) as pool:
|
66 |
+
extract_func = partial(extract_page_range, file_path)
|
67 |
+
results = pool.starmap(extract_func, ranges)
|
68 |
+
|
69 |
+
return "\n".join(filter(None, results))
|
70 |
+
except Exception:
|
71 |
+
return ""
|
72 |
+
|
73 |
def convert_file_to_text(file_path: str, file_type: str) -> str:
|
74 |
"""Convert supported file types to text, caching results."""
|
75 |
try:
|
|
|
92 |
text = ""
|
93 |
|
94 |
if text:
|
95 |
+
# Compress text by removing redundant whitespace
|
96 |
+
text = re.sub(r'\s+', ' ', text).strip()
|
97 |
with open(cache_path, "w", encoding="utf-8") as f:
|
98 |
f.write(text)
|
99 |
return text
|
|
|
185 |
def analyze(message: str, history: List[dict], files: List):
|
186 |
"""Handle analysis and return results."""
|
187 |
history.append({"role": "user", "content": message})
|
188 |
+
history.append({"role": "assistant", "content": "⏳ Extracting text from files..."})
|
189 |
yield history, None
|
190 |
|
191 |
extracted_text = ""
|
|
|
197 |
extracted_text = "\n".join(sanitize_utf8(r) for r in results if r)
|
198 |
file_hash_value = file_hash(files[0].name) if files else ""
|
199 |
|
200 |
+
history.pop() # Remove "Extracting..."
|
201 |
+
history.append({"role": "assistant", "content": "⏳ Analyzing medical records..."})
|
202 |
+
yield history, None
|
203 |
+
|
204 |
report_path = os.path.join(report_dir, f"{file_hash_value}_report.txt") if file_hash_value else None
|
205 |
|
206 |
try:
|
207 |
response = analyze_medical_records(extracted_text)
|
208 |
+
history.pop() # Remove "Analyzing..."
|
209 |
history.append({"role": "assistant", "content": response})
|
210 |
if report_path:
|
211 |
with open(report_path, "w", encoding="utf-8") as f:
|
212 |
f.write(response)
|
213 |
yield history, report_path if report_path and os.path.exists(report_path) else None
|
214 |
except Exception as e:
|
215 |
+
history.pop() # Remove "Analyzing..."
|
216 |
history.append({"role": "assistant", "content": f"❌ Error: {str(e)}"})
|
217 |
yield history, None
|
218 |
|