Update ui/ui_core.py
Browse files- ui/ui_core.py +33 -25
ui/ui_core.py
CHANGED
@@ -3,7 +3,6 @@ import os
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import pandas as pd
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import pdfplumber
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import gradio as gr
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import re
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from typing import List
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# β
Fix: Add src to Python path
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@@ -14,8 +13,8 @@ from txagent.txagent import TxAgent
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def sanitize_utf8(text: str) -> str:
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return text.encode("utf-8", "ignore").decode("utf-8")
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def clean_final_response(
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return
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def extract_all_text_from_csv_or_excel(file_path: str, progress=None, index=0, total=1) -> str:
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try:
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@@ -37,7 +36,7 @@ def extract_all_text_from_csv_or_excel(file_path: str, progress=None, index=0, t
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line = " | ".join(str(cell) for cell in row if pd.notna(cell))
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if line:
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lines.append(line)
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return f"
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except Exception as e:
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return f"[Error reading {os.path.basename(file_path)}]: {str(e)}"
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@@ -58,7 +57,7 @@ def extract_all_text_from_pdf(file_path: str, progress=None, index=0, total=1) -
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progress((index + (i / num_pages)) / total, desc=f"Reading PDF: {os.path.basename(file_path)} ({i+1}/{num_pages})")
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except Exception as e:
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extracted.append(f"[Error reading page {i+1}]: {str(e)}")
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return f"
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except Exception as e:
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return f"[Error reading PDF {os.path.basename(file_path)}]: {str(e)}"
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@@ -82,9 +81,9 @@ def chunk_text(text: str, max_tokens: int = 8192) -> List[str]:
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def create_ui(agent: TxAgent):
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with gr.Blocks(theme=gr.themes.Soft()) as demo:
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gr.Markdown("<h1 style='text-align: center;'
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chatbot = gr.Chatbot(label="CPS Assistant", height=600, type="
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file_upload = gr.File(
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label="Upload Medical File",
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file_types=[".pdf", ".txt", ".docx", ".jpg", ".png", ".csv", ".xls", ".xlsx"],
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@@ -105,7 +104,8 @@ def create_ui(agent: TxAgent):
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)
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try:
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extracted_text = ""
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if uploaded_files and isinstance(uploaded_files, list):
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@@ -127,13 +127,15 @@ def create_ui(agent: TxAgent):
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sanitized = sanitize_utf8(extracted_text.strip())
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chunks = chunk_text(sanitized)
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for i, chunk in enumerate(chunks):
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f"{context}\n\n--- Uploaded File Chunk {i+1}/{len(chunks)} ---\n\n{chunk}\n\n
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)
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generator = agent.run_gradio_chat(
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message=
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history=[],
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temperature=0.3,
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max_new_tokens=1024,
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@@ -143,24 +145,30 @@ def create_ui(agent: TxAgent):
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uploaded_files=uploaded_files,
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max_round=30
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)
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for update in generator:
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if isinstance(update, str):
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{"role": "assistant", "content": all_responses}
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]
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yield final_history
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except Exception as chat_error:
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print(f"Chat error: {chat_error}")
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inputs = [message_input, chatbot, conversation_state, file_upload]
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send_button.click(fn=handle_chat, inputs=inputs, outputs=chatbot)
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import pandas as pd
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import pdfplumber
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import gradio as gr
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from typing import List
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# β
Fix: Add src to Python path
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def sanitize_utf8(text: str) -> str:
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return text.encode("utf-8", "ignore").decode("utf-8")
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def clean_final_response(text: str) -> str:
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return text.replace("[TOOL_CALLS]", "").strip()
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def extract_all_text_from_csv_or_excel(file_path: str, progress=None, index=0, total=1) -> str:
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try:
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line = " | ".join(str(cell) for cell in row if pd.notna(cell))
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if line:
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lines.append(line)
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return f"\U0001F4C4 {os.path.basename(file_path)}\n\n" + "\n".join(lines)
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except Exception as e:
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return f"[Error reading {os.path.basename(file_path)}]: {str(e)}"
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progress((index + (i / num_pages)) / total, desc=f"Reading PDF: {os.path.basename(file_path)} ({i+1}/{num_pages})")
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except Exception as e:
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extracted.append(f"[Error reading page {i+1}]: {str(e)}")
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return f"\U0001F4C4 {os.path.basename(file_path)}\n\n" + "\n\n".join(extracted)
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except Exception as e:
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return f"[Error reading PDF {os.path.basename(file_path)}]: {str(e)}"
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def create_ui(agent: TxAgent):
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with gr.Blocks(theme=gr.themes.Soft()) as demo:
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gr.Markdown("<h1 style='text-align: center;'>\U0001F4CB CPS: Clinical Patient Support System</h1>")
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chatbot = gr.Chatbot(label="CPS Assistant", height=600, type="text")
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file_upload = gr.File(
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label="Upload Medical File",
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file_types=[".pdf", ".txt", ".docx", ".jpg", ".png", ".csv", ".xls", ".xlsx"],
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)
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try:
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history.append((message, "β³ Processing your request..."))
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yield history
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extracted_text = ""
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if uploaded_files and isinstance(uploaded_files, list):
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sanitized = sanitize_utf8(extracted_text.strip())
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chunks = chunk_text(sanitized)
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full_response = ""
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for i, chunk in enumerate(chunks):
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chunked_prompt = (
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f"{context}\n\n--- Uploaded File Content (Chunk {i+1}/{len(chunks)}) ---\n\n{chunk}\n\n"
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f"--- End of Chunk ---\n\nNow begin your analysis:"
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)
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generator = agent.run_gradio_chat(
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message=chunked_prompt,
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history=[],
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temperature=0.3,
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max_new_tokens=1024,
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uploaded_files=uploaded_files,
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max_round=30
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)
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chunk_response = ""
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for update in generator:
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if isinstance(update, str):
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chunk_response += update
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elif isinstance(update, list):
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for msg in update:
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if hasattr(msg, 'content'):
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chunk_response += msg.content
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full_response += chunk_response + "\n\n"
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full_response = clean_final_response(full_response.strip())
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history[-1] = (message, full_response)
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yield history
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except Exception as chat_error:
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print(f"Chat handling error: {chat_error}")
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error_msg = "An error occurred while processing your request. Please try again."
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if len(history) > 0 and history[-1][1].startswith("β³"):
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history[-1] = (history[-1][0], error_msg)
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else:
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history.append((message, error_msg))
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yield history
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inputs = [message_input, chatbot, conversation_state, file_upload]
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send_button.click(fn=handle_chat, inputs=inputs, outputs=chatbot)
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