tonic-discharge-guard / callbackmanager.py
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Fix typo since the tab is not showing, it should be `Tab` not `tab`
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import gradio as gr
from meldrx import MeldRxAPI
import json
import os
import tempfile
from datetime import datetime
# Import PDF utilities
from pdfutils import PDFGenerator, generate_discharge_summary
class CallbackManager:
def __init__(self, redirect_uri: str, client_secret: str = None):
client_id = os.getenv("APPID")
if not client_id:
raise ValueError("APPID environment variable not set.")
workspace_id = os.getenv("WORKSPACE_URL")
if not workspace_id:
raise ValueError("WORKSPACE_URL environment variable not set.")
self.api = MeldRxAPI(client_id, client_secret, workspace_id, redirect_uri)
self.auth_code = None
self.access_token = None
def get_auth_url(self) -> str:
return self.api.get_authorization_url()
def set_auth_code(self, code: str) -> str:
self.auth_code = code
if self.api.authenticate_with_code(code):
self.access_token = self.api.access_token
return f"Authentication successful! Access Token: {self.access_token[:10]}... (truncated)"
return "Authentication failed. Please check the code."
def get_patient_data(self) -> str:
if not self.access_token:
return "Not authenticated. Please provide a valid authorization code first."
patients = self.api.get_patients()
if patients is not None:
return json.dumps(patients, indent=2) if patients else "No patient data returned."
return "Failed to retrieve patient data."
def get_patient_documents(self, patient_id: str = None):
"""Fetch patient documents from MeldRx"""
if not self.access_token:
return "Not authenticated. Please provide a valid authorization code first."
try:
# This would call the actual MeldRx API to get documents for a specific patient
# For demonstration, we'll return mock document data
return [
{
"doc_id": "doc123",
"type": "clinical_note",
"date": "2023-01-16",
"author": "Dr. Sample Doctor",
"content": "Patient presented with symptoms of respiratory distress...",
},
{
"doc_id": "doc124",
"type": "lab_result",
"date": "2023-01-17",
"author": "Lab System",
"content": "CBC results: WBC 7.5, RBC 4.2, Hgb 14.1...",
}
]
except Exception as e:
return f"Error retrieving patient documents: {str(e)}"
def display_form(
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
):
form = f"""
**Patient Discharge Form**
- Name: {first_name} {middle_initial} {last_name}
- Date of Birth: {dob}, Age: {age}, Sex: {sex}
- Address: {address}, {city}, {state}, {zip_code}
- Doctor: {doctor_first_name} {doctor_middle_initial} {doctor_last_name}
- Hospital/Clinic: {hospital_name}
- Doctor Address: {doctor_address}, {doctor_city}, {doctor_state}, {doctor_zip}
- Admission Date: {admission_date}, Source: {referral_source}, Method: {admission_method}
- Discharge Date: {discharge_date}, Reason: {discharge_reason}
- Date of Death: {date_of_death}
- Diagnosis: {diagnosis}
- Procedures: {procedures}
- Medications: {medications}
- Prepared By: {preparer_name}, {preparer_job_title}
"""
return form
def process_fhir_bundle(fhir_bundle):
"""Extract and structure patient data from FHIR bundle"""
patients = []
for entry in fhir_bundle.get("entry", []):
resource = entry.get("resource", {})
if resource.get("resourceType") == "Patient":
patients.append(resource)
return patients
def create_patient_stripe(patient):
"""Create a UI stripe for an individual patient with enhanced functionality"""
# Safely extract name components
official_name = next(
(n for n in patient.get("name", []) if n.get("use") == "official"),
{}
)
given_names = " ".join(official_name.get("given", ["Unknown"]))
family_name = official_name.get("family", "Unknown")
# Extract demographic information
gender = patient.get("gender", "unknown").capitalize()
birth_date = patient.get("birthDate", "Unknown")
patient_id = patient.get("id", "Unknown")
# Extract address information
address = patient.get("address", [{}])[0]
city = address.get("city", "Unknown")
state = address.get("state", "")
postal_code = address.get("postalCode", "")
with gr.Row(variant="panel") as stripe:
with gr.Column(scale=3):
gr.Markdown(f"""
**{given_names} {family_name}**
*{gender} | Born: {birth_date}*
{city}, {state} {postal_code}
""")
gr.Textbox(patient_id, label="Patient ID", visible=False)
with gr.Column(scale=1):
status = gr.Dropdown(
choices=["Pending", "Reviewed", "Approved", "Rejected"],
value="Pending",
label="Review Status"
)
with gr.Column(scale=1):
generate_btn = gr.Button("Generate Report", visible=False)
probability = gr.Label("Risk Probability", visible=False)
documents_btn = gr.Button("View Documents", visible=True)
# Dynamic visibility and document handling
def update_components(selected_status):
visible = selected_status in ["Reviewed", "Approved"]
return (
gr.Button(visible=visible),
gr.Label(visible=visible, value={"Low": 0.3, "Medium": 0.6, "High": 0.9}.get(selected_status, 0.5))
)
def show_documents(patient_id):
return CALLBACK_MANAGER.get_patient_documents(patient_id)
status.change(
update_components,
inputs=status,
outputs=[generate_btn, probability]
)
documents_btn.click(
fn=show_documents,
inputs=patient_id,
outputs=gr.JSON(label="Patient Documents")
)
return stripe
def generate_pdf_from_form(
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
):
"""Generate a PDF discharge form using the provided data"""
# Create PDF generator
pdf_gen = PDFGenerator()
# Format data for PDF generation
patient_info = {
"first_name": first_name,
"last_name": last_name,
"dob": dob,
"age": age,
"sex": sex,
"mobile": "", # Not collected in the form
"address": address,
"city": city,
"state": state,
"zip": zip_code
}
discharge_info = {
"date_of_admission": admission_date,
"date_of_discharge": discharge_date,
"source_of_admission": referral_source,
"mode_of_admission": admission_method,
"discharge_against_advice": "Yes" if discharge_reason == "Discharge Against Advice" else "No"
}
diagnosis_info = {
"diagnosis": diagnosis,
"operation_procedure": procedures,
"treatment": "", # Not collected in the form
"follow_up": "" # Not collected in the form
}
medication_info = {
"medications": [medications] if medications else [],
"instructions": "" # Not collected in the form
}
prepared_by = {
"name": preparer_name,
"title": preparer_job_title,
"signature": "" # Not collected in the form
}
# Generate PDF
pdf_buffer = pdf_gen.generate_discharge_form(
patient_info,
discharge_info,
diagnosis_info,
medication_info,
prepared_by
)
# Create temporary file to save the PDF
temp_file = tempfile.NamedTemporaryFile(delete=False, suffix='.pdf')
temp_file.write(pdf_buffer.read())
temp_file_path = temp_file.name
temp_file.close()
return temp_file_path
def generate_pdf_from_meldrx(patient_data):
"""Generate a PDF using patient data from MeldRx"""
if isinstance(patient_data, str):
# If it's a string (error message or JSON string), try to parse it
try:
patient_data = json.loads(patient_data)
except:
return None, "Invalid patient data format"
if not patient_data:
return None, "No patient data available"
try:
# For demonstration, we'll use the first patient in the list if it's a list
if isinstance(patient_data, list) and len(patient_data):
patient = patient_data[0]
else:
patient = patient_data
# Extract patient info
patient_info = {
"name": f"{patient.get('name', {}).get('given', [''])[0]} {patient.get('name', {}).get('family', '')}",
"dob": patient.get('birthDate', 'Unknown'),
"patient_id": patient.get('id', 'Unknown'),
"admission_date": datetime.now().strftime("%Y-%m-%d"), # Mock data
"physician": "Dr. Provider" # Mock data
}
# Mock LLM-generated content
llm_content = {
"diagnosis": "Diagnosis information would be generated by LLM",
"treatment": "Treatment summary would be generated by LLM",
"medications": "Medication list would be generated by LLM",
"follow_up": "Follow-up instructions would be generated by LLM",
"special_instructions": "Special instructions would be generated by LLM"
}
# Create discharge summary
output_dir = tempfile.mkdtemp()
pdf_path = generate_discharge_summary(patient_info, llm_content, output_dir)
return pdf_path, "PDF generated successfully"
except Exception as e:
return None, f"Error generating PDF: {str(e)}"
CALLBACK_MANAGER = CallbackManager(
redirect_uri="https://multitransformer-discharge-guard.hf.space/callback",
client_secret=None
)
with gr.Blocks() as demo:
gr.Markdown("# Patient Discharge Form with MeldRx Integration")
with gr.Tab("Authenticate with MeldRx"):
gr.Markdown("## SMART on FHIR Authentication")
auth_url_output = gr.Textbox(label="Authorization URL", value=CALLBACK_MANAGER.get_auth_url(), interactive=False)
gr.Markdown("Copy the URL above, open it in a browser, log in, and paste the 'code' from the redirect URL below.")
auth_code_input = gr.Textbox(label="Authorization Code")
auth_submit = gr.Button("Submit Code")
auth_result = gr.Textbox(label="Authentication Result")
patient_data_button = gr.Button("Fetch Patient Data")
patient_data_output = gr.Textbox(label="Patient Data")
# Add button to generate PDF from MeldRx data
meldrx_pdf_button = gr.Button("Generate PDF from MeldRx Data")
meldrx_pdf_status = gr.Textbox(label="PDF Generation Status")
meldrx_pdf_download = gr.File(label="Download Generated PDF")
auth_submit.click(fn=CALLBACK_MANAGER.set_auth_code, inputs=auth_code_input, outputs=auth_result)
patient_data_button.click(fn=CALLBACK_MANAGER.get_patient_data, inputs=None, outputs=patient_data_output)
# Add functionality for PDF generation from MeldRx data
meldrx_pdf_button.click(
fn=generate_pdf_from_meldrx,
inputs=patient_data_output,
outputs=[meldrx_pdf_download, meldrx_pdf_status]
)
with gr.Tab("Show Patients Log"):
gr.Markdown("## Patient Dashboard")
# Store patient data in a state variable
patient_data_state = gr.State()
# Pagination controls
with gr.Row() as pagination_row:
prev_btn = gr.Button("Previous Page", visible=False)
next_btn = gr.Button("Next Page", visible=False)
# Patient stripes container
patient_stripes = gr.Column()
# Metadata display
metadata_md = gr.Markdown()
# Refresh button
refresh_btn = gr.Button("Refresh Data")
def update_patient_display(patient_data_json):
try:
fhir_bundle = json.loads(patient_data_json)
patients = process_fhir_bundle(fhir_bundle)
# Update pagination controls
has_prev = any(link["relation"] == "previous" for link in fhir_bundle.get("link", []))
has_next = any(link["relation"] == "next" for link in fhir_bundle.get("link", []))
# Create stripes
stripes = []
for patient in patients:
stripes.append(create_patient_stripe(patient))
return (
gr.Row.update(visible=has_prev or has_next),
gr.Column.update(stripes),
gr.Markdown.update(value=f"""
**Bundle Metadata**
Type: {fhir_bundle.get('type', 'Unknown')}
Total Patients: {fhir_bundle.get('total', 0)}
Last Updated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
"""),
{"patients": patients, "bundle": fhir_bundle}
)
except Exception as e:
return (
gr.Row.update(visible=False),
gr.Column.update([]),
gr.Markdown.update(value=f"Error loading patient data: {str(e)}"),
None
)
# Connect data flow
patient_data_output.change(
fn=update_patient_display,
inputs=patient_data_output,
outputs=[pagination_row, patient_stripes, metadata_md, patient_data_state]
)
refresh_btn.click(
fn=lambda: CALLBACK_MANAGER.get_patient_data(),
outputs=patient_data_output
)
with gr.Tab("Discharge Form"):
gr.Markdown("## Patient Details")
with gr.Row():
first_name = gr.Textbox(label="First Name")
last_name = gr.Textbox(label="Last Name")
middle_initial = gr.Textbox(label="Middle Initial")
with gr.Row():
dob = gr.Textbox(label="Date of Birth")
age = gr.Textbox(label="Age")
sex = gr.Textbox(label="Sex")
address = gr.Textbox(label="Address")
with gr.Row():
city = gr.Textbox(label="City")
state = gr.Textbox(label="State")
zip_code = gr.Textbox(label="Zip Code")
gr.Markdown("## Primary Healthcare Professional Details")
with gr.Row():
doctor_first_name = gr.Textbox(label="Doctor's First Name")
doctor_last_name = gr.Textbox(label="Doctor's Last Name")
doctor_middle_initial = gr.Textbox(label="Middle Initial")
hospital_name = gr.Textbox(label="Hospital/Clinic Name")
doctor_address = gr.Textbox(label="Address")
with gr.Row():
doctor_city = gr.Textbox(label="City")
doctor_state = gr.Textbox(label="State")
doctor_zip = gr.Textbox(label="Zip Code")
gr.Markdown("## Admission and Discharge Details")
with gr.Row():
admission_date = gr.Textbox(label="Date of Admission")
referral_source = gr.Textbox(label="Source of Referral")
admission_method = gr.Textbox(label="Method of Admission")
with gr.Row():
discharge_date = gr.Textbox(label="Date of Discharge")
discharge_reason = gr.Radio(["Treated", "Transferred", "Discharge Against Advice", "Patient Died"], label="Discharge Reason")
date_of_death = gr.Textbox(label="Date of Death (if applicable)")
gr.Markdown("## Diagnosis & Procedures")
diagnosis = gr.Textbox(label="Diagnosis")
procedures = gr.Textbox(label="Operation & Procedures")
gr.Markdown("## Medication Details")
medications = gr.Textbox(label="Medication on Discharge")
gr.Markdown("## Prepared By")
with gr.Row():
preparer_name = gr.Textbox(label="Name")
preparer_job_title = gr.Textbox(label="Job Title")
# Add buttons for both display form and generate PDF
with gr.Row():
submit_display = gr.Button("Display Form")
submit_pdf = gr.Button("Generate PDF")
# Output areas
form_output = gr.Markdown()
pdf_output = gr.File(label="Download PDF")
# Connect the display form button
submit_display.click(
display_form,
inputs=[
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
],
outputs=form_output
)
# Connect the generate PDF button
submit_pdf.click(
generate_pdf_from_form,
inputs=[
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
],
outputs=pdf_output
)
demo.launch()