import gradio as gr import numpy as np from huggingface_hub import from_pretrained_fastai learn_imp = from_pretrained_fastai('MikeTrizna/Prunus_lineage_classifier') def predict(image_np, description=None): classes = ['neotropical racemose', 'paleotropical racemose', 'temperate diploid', 'temperate racemose'] pred,pred_idx,probs = learn_imp.predict(image_np) confidences = {classes[idx]: f'{prob:.04f}' for idx, prob in enumerate(probs)} return confidences example_metadata = [{'idigbio_specimen': 'e025ff74-333b-461f-a86e-63d8f4a6bd90', 'idigbio_media': 'e3276fdd-ce58-40dc-bf20-8742f7634428', 'organism': 'Prunus oocarpa', 'intrageneric_group': 'Paleotropical racemose'}] table_header = """**Example Guide** | Image | Species | Link to iDigBio Specimen Record | Intrageneric group | | --- | --- | --- | --- | """ table_body = '' for example in example_metadata: image_src = f"" species = f"*{example['organism']}*" idigbio_link = f"https://www.idigbio.org/portal/records/{example['idigbio_specimen']}" intrageneric_group = example['intrageneric_group'] table_row = ' | '.join([image_src, species, idigbio_link, intrageneric_group]) table_body += table_row + '\n' example_table = table_header + table_body example_list = ["examples/myrtifolia_1c086296-6d1f-4218-a18a-ca2f86c295d0.jpg", "examples/oleifolia_104f44c9-63f1-4579-93c2-54c6ddeddeda.jpg", "examples/oocarpa_e3276fdd-ce58-40dc-bf20-8742f7634428.jpg", "examples/pullei_e5ac59df-5b18-4c8d-a19b-02131d358855.jpg", "examples/serotina_0060a57d-e779-4984-913c-95b576daf0d3.jpg", "examples/grayana_b9fa9ff9-2e8b-42f5-8728-5b0b5be98490.jpg", "examples/glandulosa_52e06de9-c035-4afc-9fac-c8bee7628d38.jpg", "examples/pensylvanica_0b13e5eb-73da-4e0e-9b1a-794b737f7716.jpg"] demo = gr.Interface(predict, gr.Image(type="numpy"), outputs="label", examples=example_list, description="This model can place herbarium sheet images from the genus Prunus into one of four categories that represent key clades within the genus: Solitary/Corymbose, Temperate Racemose, Neotropical Racemose, Paleotropical Racemose.", title="Image classification of four major lineages in the plum genus", article=example_table) demo.launch()