MikeTrizna commited on
Commit
8b8c9a9
·
1 Parent(s): 3d01956

Finished the full example table at the bottom with links and images.

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Files changed (1) hide show
  1. app.py +52 -4
app.py CHANGED
@@ -11,10 +11,52 @@ def predict(image_np, description=None):
11
  confidences = {classes[idx]: f'{prob:.04f}' for idx, prob in enumerate(probs)}
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  return confidences
13
 
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- example_metadata = [{'idigbio_specimen': 'e025ff74-333b-461f-a86e-63d8f4a6bd90',
 
 
 
 
 
 
 
 
 
 
 
 
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  'idigbio_media': 'e3276fdd-ce58-40dc-bf20-8742f7634428',
 
 
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  'organism': 'Prunus oocarpa',
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- 'intrageneric_group': 'Paleotropical racemose'}]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  table_header = """**Example Guide**
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  | Image | Species | Link to iDigBio Specimen Record | Intrageneric group |
@@ -22,8 +64,10 @@ table_header = """**Example Guide**
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  """
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  table_body = ''
 
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  for example in example_metadata:
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- image_src = f"<image src = 'https://api.idigbio.org/v2/media/{example['idigbio_media']}?size=thumbnail'></image>"
 
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  species = f"*{example['organism']}*"
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  idigbio_link = f"https://www.idigbio.org/portal/records/{example['idigbio_specimen']}"
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  intrageneric_group = example['intrageneric_group']
@@ -42,11 +86,15 @@ example_list = ["examples/myrtifolia_1c086296-6d1f-4218-a18a-ca2f86c295d0.jpg",
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  "examples/glandulosa_52e06de9-c035-4afc-9fac-c8bee7628d38.jpg",
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  "examples/pensylvanica_0b13e5eb-73da-4e0e-9b1a-794b737f7716.jpg"]
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  demo = gr.Interface(predict,
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  gr.Image(type="numpy"),
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  outputs="label",
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  examples=example_list,
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- description="This model can place herbarium sheet images from the genus Prunus into one of four categories that represent key clades within the genus: Solitary/Corymbose, Temperate Racemose, Neotropical Racemose, Paleotropical Racemose.",
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  title="Image classification of four major lineages in the plum genus",
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  article=example_table)
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11
  confidences = {classes[idx]: f'{prob:.04f}' for idx, prob in enumerate(probs)}
12
  return confidences
13
 
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+ example_metadata = [{'idigbio_specimen': '36b28730-fd06-44b4-86a4-77d3be052ef1',
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+ 'idigbio_media': '1c086296-6d1f-4218-a18a-ca2f86c295d0',
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+ 'gbif_occurrence': '2425450644',
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+ 'gbif_media': '60d5b76a58cf28eff526d5c1d7906321',
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+ 'organism': 'Prunus myrtifolia',
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+ 'intrageneric_group': 'Neotropical racemose'},
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+ {'idigbio_specimen': '0252042a-e14f-4437-99f8-f9c690f1d2a8',
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+ 'idigbio_media': '104f44c9-63f1-4579-93c2-54c6ddeddeda',
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+ 'gbif_occurrence': '1056985949',
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+ 'gbif_media': '65d035ce17427cba5a698850e903cbc8',
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+ 'organism': 'Prunus oleifolia',
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+ 'intrageneric_group': 'Neotropical racemose'},
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+ {'idigbio_specimen': 'e025ff74-333b-461f-a86e-63d8f4a6bd90',
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  'idigbio_media': 'e3276fdd-ce58-40dc-bf20-8742f7634428',
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+ 'gbif_occurrence': '2515155769',
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+ 'gbif_media': 'd952c78c4b50825dc267d3ab915ea71e',
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  'organism': 'Prunus oocarpa',
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+ 'intrageneric_group': 'Paleotropical racemose'},
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+ {'idigbio_specimen': '4a991d4d-d6a5-4a4a-9c99-9af948f9e0e0',
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+ 'idigbio_media': 'e5ac59df-5b18-4c8d-a19b-02131d358855',
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+ 'gbif_occurrence': '2515160308',
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+ 'gbif_media': 'fc94119768b9ea1c453cb0ab9887b54a',
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+ 'organism': 'Prunus pullei',
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+ 'intrageneric_group': 'Paleotropical racemose'},
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+ {'idigbio_specimen': 'e32b4d05-5389-4466-83cb-25e319c2fa9f',
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+ 'idigbio_media': '0060a57d-e779-4984-913c-95b576daf0d3',
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+ 'gbif_occurrence': '3865356188',
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+ 'gbif_media': 'c40a3ebe7ea67f67d33b7405134f3133',
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+ 'organism': 'Prunus serotina',
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+ 'intrageneric_group': 'Temperate racemose'},
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+ {'idigbio_specimen': '31697ac1-223d-477b-bc8d-0d10ced90ad0',
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+ 'idigbio_media': 'b9fa9ff9-2e8b-42f5-8728-5b0b5be98490',
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+ 'gbif_occurrence': '2515504033',
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+ 'gbif_media': 'be7e108416c0a052311f879642997dee',
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+ 'organism': 'Prunus grayana',
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+ 'intrageneric_group': 'Temperate racemose'},
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+ {'idigbio_specimen': '80a8afd7-ca01-4df1-a566-305912e25166',
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+ 'idigbio_media': '52e06de9-c035-4afc-9fac-c8bee7628d38',
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+ 'organism': 'Prunus glandulosa',
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+ 'intrageneric_group': 'Solitary/Corymbose'},
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+ {'idigbio_specimen': '7835f8bd-d78c-4884-a669-853634296371',
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+ 'idigbio_media': '0b13e5eb-73da-4e0e-9b1a-794b737f7716',
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+ 'gbif_occurrence': '2265382670',
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+ 'gbif_media': '1373276d8fdd232579e7d04c4e64edb1',
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+ 'organism': 'Prunus pensylvanica',
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+ 'intrageneric_group': 'Solitary/Corymbose'}]
60
 
61
  table_header = """**Example Guide**
62
  | Image | Species | Link to iDigBio Specimen Record | Intrageneric group |
 
64
  """
65
 
66
  table_body = ''
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+ gbif_scale = 150
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  for example in example_metadata:
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+ #image_src = f"<image src = 'https://api.idigbio.org/v2/media/{example['idigbio_media']}?size=thumbnail'></image>"
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+ image_src = f"<image src = 'https://api.gbif.org/v1/image/cache/fit-in/{gbif_scale}x/occurrence/{example['gbif_occurrence']}/media/{example['gbif_media']}'></image>"
71
  species = f"*{example['organism']}*"
72
  idigbio_link = f"https://www.idigbio.org/portal/records/{example['idigbio_specimen']}"
73
  intrageneric_group = example['intrageneric_group']
 
86
  "examples/glandulosa_52e06de9-c035-4afc-9fac-c8bee7628d38.jpg",
87
  "examples/pensylvanica_0b13e5eb-73da-4e0e-9b1a-794b737f7716.jpg"]
88
 
89
+ description = """This model can place herbarium sheet images from the genus Prunus into one of four
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+ categories that represent key clades within the genus: Solitary/Corymbose, Temperate Racemose, Neotropical
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+ Racemose, Paleotropical Racemose."""
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+
93
  demo = gr.Interface(predict,
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  gr.Image(type="numpy"),
95
  outputs="label",
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  examples=example_list,
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+ description=description,
98
  title="Image classification of four major lineages in the plum genus",
99
  article=example_table)
100