Update Quality_Control.py

Quality_Control.py

@@ -29,33 +29,8 @@ warnings.filterwarnings('ignore', category= FutureWarning)
 warnings.filterwarnings('ignore', category= UserWarning)
 
 
-'''get_ipython().run_line_magic('store', '-r base_dir')
-get_ipython().run_line_magic('store', '-r set_path')
-get_ipython().run_line_magic('store', '-r ls_samples')
-get_ipython().run_line_magic('store', '-r selected_metadata_files')'''
-
-
-'''# Retrieve the variables from the JSON file
-with open('stored_variables.json', 'r') as file:
-    stored_vars = json.load(file)
-    
-base_dir = stored_vars['base_dir']
-set_path = stored_vars['set_path']
-selected_metadata_files = stored_vars['selected_metadata_files']
-ls_samples =  stored_vars['ls_samples']
-print(f"Base Directory: {base_dir}")
-print(f"Set Path: {set_path}")
-print(f"Selected_metadata_files: {selected_metadata_files}")
-
-
-print(base_dir)
-print(set_path)
-print(ls_samples)
-print(selected_metadata_files)'''
-
-
     
-base_dir = '/Users/harshithakolipaka/Downloads/wetransfer_data-zip_2024-05-17_1431'
+base_dir = 'Downloads/wetransfer_data-zip_2024-05-17_1431'
 set_path = 'test'
 selected_metadata_files = "['Slide_B_DD1s1.one_1.tif.csv', 'Slide_B_DD1s1.one_2.tif.csv']"
 ls_samples = "['Ashlar_Exposure_Time.csv', 'new_data.csv', 'DD3S1.csv', 'DD3S2.csv', 'DD3S3.csv', 'TMA.csv']"