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@@ -59,3 +59,8 @@ mice_df/TMA1s1_data.csv filter=lfs diff=lfs merge=lfs -text
 mice_df/TMA1s2_data.csv filter=lfs diff=lfs merge=lfs -text
 mice_df/TMA2s1_data.csv filter=lfs diff=lfs merge=lfs -text
 mice_df/TMA2s2_data.csv filter=lfs diff=lfs merge=lfs -text
+mice_df/SetA_data/mTMA_data.csv filter=lfs diff=lfs merge=lfs -text
+mice_df/SetA_data/TMA1s1_data.csv filter=lfs diff=lfs merge=lfs -text
+mice_df/SetA_data/TMA1s2_data.csv filter=lfs diff=lfs merge=lfs -text
+mice_df/SetA_data/TMA2s1_data.csv filter=lfs diff=lfs merge=lfs -text
+mice_df/SetA_data/TMA2s2_data.csv filter=lfs diff=lfs merge=lfs -text

mice_df/SetA_data/Ashlar_Exposure_Time.csv

@@ -0,0 +1,191 @@
+Target,Round,Channel,ExposureTime
+DAPI0,R0,c0,5.0
+AF488,R0,c1,200.0
+AF555,R0,c2,1000.0
+AF647,R0,c3,1500.0
+AF750,R0,c4,1500.0
+DAPI10,R10,c0,10.0
+vim,R10,c1,100.0
+pten,R10,c2,400.0
+cd31,R10,c3,500.0
+r10c5,R10,c4,50.0
+DAPI11,R11,c0,2.0
+r11c2,R11,c1,50.0
+fibronectine,R11,c2,20.0
+pdl1b,R11,c3,50.0
+r11c5,R11,c4,50.0
+DAPI12,R12,c0,2.0
+r12c2,R12,c1,50.0
+cd62l,R12,c2,500.0
+pdl1,R12,c3,300.0
+r12c5,R12,c4,50.0
+DAPI13,R13,c0,2.0
+r13c2,R13,c1,50.0
+foxp3,R13,c2,500.0
+tbet,R13,c3,500.0
+r13c5,R13,c4,50.0
+DAPI14,R14,c0,5.0
+r14c2,R14,c1,50.0
+r14c3,R14,c2,50.0
+gal3,R14,c3,20.0
+r14c5,R14,c4,50.0
+DAPI15,R15,c0,5.0
+r15c2,R15,c1,50.0
+r15c3,R15,c2,50.0
+livarg,R15,c3,10.0
+r15c5,R15,c4,50.0
+DAPI16,R16,c0,5.0
+r16c2,R16,c1,50.0
+r16c3,R16,c2,50.0
+ly6g,R16,c3,1000.0
+r16c5,R16,c4,50.0
+DAPI17,R17,c0,5.0
+r17c2,R17,c1,50.0
+r17c3,R17,c2,50.0
+nkrp1c,R17,c3,1500.0
+r17c5,R17,c4,50.0
+DAPI18,R18,c0,10.0
+asmaB,R18,c1,50.0
+cd163b,R18,c2,200.0
+r18c4,R18,c3,50.0
+r18c5,R18,c4,50.0
+DAPI1,R1,c0,5.0
+b7h3,R1,c1,200.0
+b7h4,R1,c2,350.0
+ph2ax,R1,c3,150.0
+cd44,R1,c4,200.0
+DAPI2,R2,c0,10.0
+cd47,R2,c1,120.0
+perk,R2,c2,400.0
+pakt,R2,c3,1500.0
+tim3,R2,c4,100.0
+DAPI3,R3,c0,8.0
+phh3,R3,c1,100.0
+ki67,R3,c2,300.0
+ccas3,R3,c3,1500.0
+gal9,R3,c4,150.0
+DAPI4,R4,c0,5.0
+colVI,R4,c1,50.0
+r4c3,R4,c2,100.0
+cd19,R4,c3,300.0
+epcam,R4,c4,200.0
+DAPI5,R5,c0,7.0
+r5c2,R5,c1,50.0
+cd163,R5,c2,150.0
+cd45b,R5,c3,1500.0
+gal9b,R5,c4,100.0
+DAPI6,R6,c0,5.0
+desmine,R6,c1,100.0
+cd4,R6,c2,200.0
+cd8,R6,c3,100.0
+cyk,R6,c4,150.0
+DAPI7,R7,c0,5.0
+r7c2,R7,c1,50.0
+foxp3b,R7,c2,300.0
+cd45,R7,c3,1500.0
+ecad,R7,c4,100.0
+DAPI8,R8,c0,7.0
+asma,R8,c1,50.0
+cd68,R8,c2,200.0
+cd86,R8,c3,700.0
+elastin,R8,c4,800.0
+DAPI9,R9,c0,5.0
+r9c2,R9,c1,50.0
+ly6c,R9,c2,200.0
+cd11c,R9,c3,150.0
+erg,R9,c4,400.0
+DAPI0,R0,c0,5.0
+AF488,R0,c1,200.0
+AF555,R0,c2,1000.0
+AF647,R0,c3,1500.0
+AF750,R0,c4,1500.0
+DAPI10,R10,c0,10.0
+vim,R10,c1,100.0
+pten,R10,c2,400.0
+cd31,R10,c3,500.0
+r10c5,R10,c4,50.0
+DAPI11,R11,c0,2.0
+r11c2,R11,c1,50.0
+fibronectine,R11,c2,20.0
+pdl1b,R11,c3,50.0
+r11c5,R11,c4,50.0
+DAPI12,R12,c0,2.0
+r12c2,R12,c1,50.0
+cd62l,R12,c2,500.0
+pdl1,R12,c3,300.0
+r12c5,R12,c4,50.0
+DAPI13,R13,c0,2.0
+r13c2,R13,c1,50.0
+foxp3,R13,c2,500.0
+tbet,R13,c3,500.0
+r13c5,R13,c4,50.0
+DAPI14,R14,c0,5.0
+r14c2,R14,c1,50.0
+r14c3,R14,c2,50.0
+gal3,R14,c3,20.0
+r14c5,R14,c4,50.0
+DAPI15,R15,c0,5.0
+r15c2,R15,c1,50.0
+r15c3,R15,c2,50.0
+livarg,R15,c3,10.0
+r15c5,R15,c4,50.0
+DAPI16,R16,c0,5.0
+r16c2,R16,c1,50.0
+r16c3,R16,c2,50.0
+ly6g,R16,c3,1000.0
+r16c5,R16,c4,50.0
+DAPI17,R17,c0,5.0
+r17c2,R17,c1,50.0
+r17c3,R17,c2,50.0
+nkrp1c,R17,c3,1500.0
+r17c5,R17,c4,50.0
+DAPI18,R18,c0,10.0
+asmaB,R18,c1,50.0
+cd163b,R18,c2,200.0
+r18c4,R18,c3,50.0
+r18c5,R18,c4,50.0
+DAPI1,R1,c0,5.0
+b7h3,R1,c1,200.0
+b7h4,R1,c2,350.0
+ph2ax,R1,c3,150.0
+cd44,R1,c4,200.0
+DAPI2,R2,c0,5.0
+cd47,R2,c1,120.0
+perk,R2,c2,400.0
+pakt,R2,c3,1500.0
+tim3,R2,c4,100.0
+DAPI3,R3,c0,8.0
+phh3,R3,c1,100.0
+ki67,R3,c2,300.0
+ccas3,R3,c3,1500.0
+gal9,R3,c4,150.0
+DAPI4,R4,c0,5.0
+colVI,R4,c1,50.0
+r4c3,R4,c2,100.0
+cd19,R4,c3,300.0
+epcam,R4,c4,200.0
+DAPI5,R5,c0,7.0
+r5c2,R5,c1,50.0
+cd163,R5,c2,150.0
+cd45b,R5,c3,1500.0
+gal9b,R5,c4,100.0
+DAPI6,R6,c0,7.0
+desmine,R6,c1,100.0
+cd4,R6,c2,200.0
+cd8,R6,c3,100.0
+cyk,R6,c4,150.0
+DAPI7,R7,c0,5.0
+r7c2,R7,c1,50.0
+foxp3b,R7,c2,300.0
+cd45,R7,c3,1500.0
+ecad,R7,c4,100.0
+DAPI8,R8,c0,7.0
+asma,R8,c1,50.0
+cd68,R8,c2,200.0
+cd86,R8,c3,700.0
+elastin,R8,c4,800.0
+DAPI9,R9,c0,5.0
+r9c2,R9,c1,50.0
+ly6c,R9,c2,200.0
+cd11c,R9,c3,150.0
+erg,R9,c4,400.0

mice_df/SetA_data/TMA1s1_data.csv

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+version https://git-lfs.github.com/spec/v1
+oid sha256:be3cd8110534e9c74f36ba0a3e89e7cffd22dad2b5bea553e7e7f55e387c4294
+size 1346874674

mice_df/SetA_data/TMA1s2_data.csv

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+version https://git-lfs.github.com/spec/v1
+oid sha256:e8353840bfbe4d57a149c869e4be4b12228d8f31ae20236aa1cec9c3b14ac2db
+size 1492849413

mice_df/SetA_data/TMA2s1_data.csv

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+version https://git-lfs.github.com/spec/v1
+oid sha256:e7417f87a696d8a5b7d6c4c6a852587cdeda0d0e9613061e03957e1b5c2d9dd5
+size 1500119549

mice_df/SetA_data/TMA2s2_data.csv

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+version https://git-lfs.github.com/spec/v1
+oid sha256:68d0fbb2b5c6ed9b71720d581b1f7f12c794b1e11525f8827aa0afba6c5987ce
+size 1045234356

mice_df/SetA_data/mTMA_data.csv

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+version https://git-lfs.github.com/spec/v1
+oid sha256:385aaee144b20de63639a43f57ad2ab3b5f6a0c3778adaa1184fbd2007d15985
+size 277711981

mice_df/SetA_data/stored_variables.json

@@ -0,0 +1,99 @@
+{
+    "intensities": [
+        "cyk_Cell_Intensity_Average",
+        "r17c3_Cell_Intensity_Average",
+        "r12c5_Cell_Intensity_Average",
+        "DAPI16_Cell_Intensity_Average",
+        "ecad_Cell_Intensity_Average",
+        "r15c3_Cell_Intensity_Average",
+        "asma_Cell_Intensity_Average",
+        "DAPI7_Cell_Intensity_Average",
+        "DAPI10_Cell_Intensity_Average",
+        "r4c3_Cell_Intensity_Average",
+        "DAPI3_Cell_Intensity_Average",
+        "AF750_Cell_Intensity_Average",
+        "pdl1_Cell_Intensity_Average",
+        "b7h3_Cell_Intensity_Average",
+        "elastin_Cell_Intensity_Average",
+        "r11c5_Cell_Intensity_Average",
+        "r16c2_Cell_Intensity_Average",
+        "foxp3_Cell_Intensity_Average",
+        "r13c5_Cell_Intensity_Average",
+        "cd4_Cell_Intensity_Average",
+        "cd68_Cell_Intensity_Average",
+        "r17c5_Cell_Intensity_Average",
+        "gal3_Cell_Intensity_Average",
+        "ly6c_Cell_Intensity_Average",
+        "r18c5_Cell_Intensity_Average",
+        "cd44_Cell_Intensity_Average",
+        "r16c3_Cell_Intensity_Average",
+        "AF488_Cell_Intensity_Average",
+        "cd47_Cell_Intensity_Average",
+        "gal9_Cell_Intensity_Average",
+        "r5c2_Cell_Intensity_Average",
+        "r15c5_Cell_Intensity_Average",
+        "r16c5_Cell_Intensity_Average",
+        "DAPI12_Cell_Intensity_Average",
+        "DAPI0_Cell_Intensity_Average",
+        "b7h4_Cell_Intensity_Average",
+        "gal9b_Cell_Intensity_Average",
+        "desmine_Cell_Intensity_Average",
+        "tbet_Cell_Intensity_Average",
+        "arg1_Cell_Intensity_Average",
+        "erg_Cell_Intensity_Average",
+        "r14c5_Cell_Intensity_Average",
+        "cd8_Cell_Intensity_Average",
+        "r7c2_Cell_Intensity_Average",
+        "epcam_Cell_Intensity_Average",
+        "DAPI2_Cell_Intensity_Average",
+        "DAPI1_Cell_Intensity_Average",
+        "cd86_Cell_Intensity_Average",
+        "r14c2_Cell_Intensity_Average",
+        "cd163b_Cell_Intensity_Average",
+        "AF647_Cell_Intensity_Average",
+        "colVI_Cell_Intensity_Average",
+        "tim3_Cell_Intensity_Average",
+        "r12c2_Cell_Intensity_Average",
+        "asmaB_Cell_Intensity_Average",
+        "r10c5_Cell_Intensity_Average",
+        "DAPI14_Cell_Intensity_Average",
+        "ki67_Cell_Intensity_Average",
+        "ly6g_Cell_Intensity_Average",
+        "DAPI11_Cell_Intensity_Average",
+        "DAPI17_Cell_Intensity_Average",
+        "fibronectine_Cell_Intensity_Average",
+        "pdl1b_Cell_Intensity_Average",
+        "DAPI6_Cell_Intensity_Average",
+        "foxp3b_Cell_Intensity_Average",
+        "cd62l_Cell_Intensity_Average",
+        "AF555_Cell_Intensity_Average",
+        "pten_Cell_Intensity_Average",
+        "r11c2_Cell_Intensity_Average",
+        "r13c2_Cell_Intensity_Average",
+        "r17c2_Cell_Intensity_Average",
+        "r15c2_Cell_Intensity_Average",
+        "ccas3_Cell_Intensity_Average",
+        "cd31_Cell_Intensity_Average",
+        "cd19_Cell_Intensity_Average",
+        "r18c4_Cell_Intensity_Average",
+        "nkrp1c_Cell_Intensity_Average",
+        "DAPI8_Cell_Intensity_Average",
+        "perk_Cell_Intensity_Average",
+        "r14c3_Cell_Intensity_Average",
+        "DAPI15_Cell_Intensity_Average",
+        "DAPI18_Cell_Intensity_Average",
+        "cd11c_Cell_Intensity_Average",
+        "cd45_Cell_Intensity_Average",
+        "ph2ax_Cell_Intensity_Average",
+        "cd163_Cell_Intensity_Average",
+        "DAPI5_Cell_Intensity_Average",
+        "pakt_Cell_Intensity_Average",
+        "vim_Cell_Intensity_Average",
+        "r9c2_Cell_Intensity_Average",
+        "DAPI4_Cell_Intensity_Average",
+        "cd45b_Cell_Intensity_Average",
+        "DAPI13_Cell_Intensity_Average",
+        "DAPI9_Cell_Intensity_Average",
+        "phh3_Cell_Intensity_Average"
+    ]
+}

mice_df/SetA_metadata/Ashlar_Exposure_Time.csv

@@ -0,0 +1,191 @@
+Target,Round,Channel,ExposureTime
+DAPI0,R0,c0,5.0
+AF488,R0,c1,200.0
+AF555,R0,c2,1000.0
+AF647,R0,c3,1500.0
+AF750,R0,c4,1500.0
+DAPI10,R10,c0,10.0
+vim,R10,c1,100.0
+pten,R10,c2,400.0
+cd31,R10,c3,500.0
+r10c5,R10,c4,50.0
+DAPI11,R11,c0,2.0
+r11c2,R11,c1,50.0
+fibronectine,R11,c2,20.0
+pdl1b,R11,c3,50.0
+r11c5,R11,c4,50.0
+DAPI12,R12,c0,2.0
+r12c2,R12,c1,50.0
+cd62l,R12,c2,500.0
+pdl1,R12,c3,300.0
+r12c5,R12,c4,50.0
+DAPI13,R13,c0,2.0
+r13c2,R13,c1,50.0
+foxp3,R13,c2,500.0
+tbet,R13,c3,500.0
+r13c5,R13,c4,50.0
+DAPI14,R14,c0,5.0
+r14c2,R14,c1,50.0
+r14c3,R14,c2,50.0
+gal3,R14,c3,20.0
+r14c5,R14,c4,50.0
+DAPI15,R15,c0,5.0
+r15c2,R15,c1,50.0
+r15c3,R15,c2,50.0
+livarg,R15,c3,10.0
+r15c5,R15,c4,50.0
+DAPI16,R16,c0,5.0
+r16c2,R16,c1,50.0
+r16c3,R16,c2,50.0
+ly6g,R16,c3,1000.0
+r16c5,R16,c4,50.0
+DAPI17,R17,c0,5.0
+r17c2,R17,c1,50.0
+r17c3,R17,c2,50.0
+nkrp1c,R17,c3,1500.0
+r17c5,R17,c4,50.0
+DAPI18,R18,c0,10.0
+asmaB,R18,c1,50.0
+cd163b,R18,c2,200.0
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+r18c5,R18,c4,50.0
+DAPI1,R1,c0,5.0
+b7h3,R1,c1,200.0
+b7h4,R1,c2,350.0
+ph2ax,R1,c3,150.0
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+cd47,R2,c1,120.0
+perk,R2,c2,400.0
+pakt,R2,c3,1500.0
+tim3,R2,c4,100.0
+DAPI3,R3,c0,8.0
+phh3,R3,c1,100.0
+ki67,R3,c2,300.0
+ccas3,R3,c3,1500.0
+gal9,R3,c4,150.0
+DAPI4,R4,c0,5.0
+colVI,R4,c1,50.0
+r4c3,R4,c2,100.0
+cd19,R4,c3,300.0
+epcam,R4,c4,200.0
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+cd163,R5,c2,150.0
+cd45b,R5,c3,1500.0
+gal9b,R5,c4,100.0
+DAPI6,R6,c0,5.0
+desmine,R6,c1,100.0
+cd4,R6,c2,200.0
+cd8,R6,c3,100.0
+cyk,R6,c4,150.0
+DAPI7,R7,c0,5.0
+r7c2,R7,c1,50.0
+foxp3b,R7,c2,300.0
+cd45,R7,c3,1500.0
+ecad,R7,c4,100.0
+DAPI8,R8,c0,7.0
+asma,R8,c1,50.0
+cd68,R8,c2,200.0
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+elastin,R8,c4,800.0
+DAPI9,R9,c0,5.0
+r9c2,R9,c1,50.0
+ly6c,R9,c2,200.0
+cd11c,R9,c3,150.0
+erg,R9,c4,400.0
+DAPI0,R0,c0,5.0
+AF488,R0,c1,200.0
+AF555,R0,c2,1000.0
+AF647,R0,c3,1500.0
+AF750,R0,c4,1500.0
+DAPI10,R10,c0,10.0
+vim,R10,c1,100.0
+pten,R10,c2,400.0
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+r10c5,R10,c4,50.0
+DAPI11,R11,c0,2.0
+r11c2,R11,c1,50.0
+fibronectine,R11,c2,20.0
+pdl1b,R11,c3,50.0
+r11c5,R11,c4,50.0
+DAPI12,R12,c0,2.0
+r12c2,R12,c1,50.0
+cd62l,R12,c2,500.0
+pdl1,R12,c3,300.0
+r12c5,R12,c4,50.0
+DAPI13,R13,c0,2.0
+r13c2,R13,c1,50.0
+foxp3,R13,c2,500.0
+tbet,R13,c3,500.0
+r13c5,R13,c4,50.0
+DAPI14,R14,c0,5.0
+r14c2,R14,c1,50.0
+r14c3,R14,c2,50.0
+gal3,R14,c3,20.0
+r14c5,R14,c4,50.0
+DAPI15,R15,c0,5.0
+r15c2,R15,c1,50.0
+r15c3,R15,c2,50.0
+livarg,R15,c3,10.0
+r15c5,R15,c4,50.0
+DAPI16,R16,c0,5.0
+r16c2,R16,c1,50.0
+r16c3,R16,c2,50.0
+ly6g,R16,c3,1000.0
+r16c5,R16,c4,50.0
+DAPI17,R17,c0,5.0
+r17c2,R17,c1,50.0
+r17c3,R17,c2,50.0
+nkrp1c,R17,c3,1500.0
+r17c5,R17,c4,50.0
+DAPI18,R18,c0,10.0
+asmaB,R18,c1,50.0
+cd163b,R18,c2,200.0
+r18c4,R18,c3,50.0
+r18c5,R18,c4,50.0
+DAPI1,R1,c0,5.0
+b7h3,R1,c1,200.0
+b7h4,R1,c2,350.0
+ph2ax,R1,c3,150.0
+cd44,R1,c4,200.0
+DAPI2,R2,c0,5.0
+cd47,R2,c1,120.0
+perk,R2,c2,400.0
+pakt,R2,c3,1500.0
+tim3,R2,c4,100.0
+DAPI3,R3,c0,8.0
+phh3,R3,c1,100.0
+ki67,R3,c2,300.0
+ccas3,R3,c3,1500.0
+gal9,R3,c4,150.0
+DAPI4,R4,c0,5.0
+colVI,R4,c1,50.0
+r4c3,R4,c2,100.0
+cd19,R4,c3,300.0
+epcam,R4,c4,200.0
+DAPI5,R5,c0,7.0
+r5c2,R5,c1,50.0
+cd163,R5,c2,150.0
+cd45b,R5,c3,1500.0
+gal9b,R5,c4,100.0
+DAPI6,R6,c0,7.0
+desmine,R6,c1,100.0
+cd4,R6,c2,200.0
+cd8,R6,c3,100.0
+cyk,R6,c4,150.0
+DAPI7,R7,c0,5.0
+r7c2,R7,c1,50.0
+foxp3b,R7,c2,300.0
+cd45,R7,c3,1500.0
+ecad,R7,c4,100.0
+DAPI8,R8,c0,7.0
+asma,R8,c1,50.0
+cd68,R8,c2,200.0
+cd86,R8,c3,700.0
+elastin,R8,c4,800.0
+DAPI9,R9,c0,5.0
+r9c2,R9,c1,50.0
+ly6c,R9,c2,200.0
+cd11c,R9,c3,150.0
+erg,R9,c4,400.0

mice_df/SetA_metadata/Exposure_Time.csv

@@ -0,0 +1,77 @@
+Round,Target,Exp,Channel
+R0,AF488,200,C2
+R0,AF555,1000,C3
+R0,AF647,1500,C4
+R0,AF750,1500,C5
+R1,vim,100,C2
+R1,pten,400,C3
+R1,cd31,500,C4
+R1,r10c5,50,C5
+R2,r11c2,50,C2
+R2,fibronectine,20,C3
+R2,pdl1b,50,C4
+R2,r11c5,50,C5
+R3,r12c2,50,C2
+R3,cd62l,500,C3
+R3,pdl1,300,C4
+R3,r12c5,50,C5
+R4,r13c2,50,C2
+R4,foxp3,500,C3
+R4,tbet,500,C4
+R4,r13c5,50,C5
+R5,r14c2,50,C2
+R5,r14c3,50,C3
+R5,gal3,20,C4
+R5,r14c5,50,C5
+R6,r15c2,50,C2
+R6,r15c3,50,C3
+R6,arg1,10,C4
+R6,r15c5,50,C5
+R7,r16c2,50,C2
+R7,r16c3,50,C3
+R7,ly6g,1000,C4
+R7,r16c5,50,C5
+R8,r17c2,50,C2
+R8,r17c3,50,C3
+R8,nkrp1c,1500,C4
+R8,r17c5,50,C5
+R9,b7h3,200,C2
+R9,b7h4,350,C3
+R9,ph2ax,150,C4
+R9,cd44,200,C5
+R10,cd47,120,C2
+R10,perk,400,C3
+R10,pakt,1500,C4
+R10,tim3,100,C5
+R11,phh3,100,C2
+R11,ki67,300,C3
+R11,ccas3,1500,C4
+R11,gal9,150,C5
+R12,colVI,50,C2
+R12,r4c3,100,C3
+R12,cd19,300,C4
+R12,epcam,200,C5
+R13,r5c2,50,C2
+R13,cd163,150,C3
+R13,cd45b,1500,C4
+R13,gal9b,100,C5
+R14,desmine,100,C2
+R14,cd4,200,C3
+R14,cd8,100,C4
+R14,cyk,150,C5
+R15,r7c2,50,C2
+R15,foxp3b,300,C3
+R15,cd45,1500,C4
+R15,ecad,100,C5
+R16,asma,50,C2
+R16,cd68,200,C3
+R16,cd86,700,C4
+R16,elastin,800,C5
+R17,r9c2,50,C2
+R17,ly6c,200,C3
+R17,cd11c,150,C4
+R17,erg,400,C5
+R18,asmaB,50,C2
+R18,cd163b,200,C3
+R18,r18c4,50,C4
+R18,r18c5,50,C5

mice_df/SetA_metadata/To_analyse_mTMA.ome.tif.csv

@@ -0,0 +1,96 @@
+Channel,Name,Cycle,ChannelIndex,ExposureTime,ExposureTimeUnit,Fluor,AcquisitionMode,IlluminationType,ContrastMethod,ExcitationWavelength,ExcitationWavelengthUnit,EmissionWavelength,EmissionWavelengthUnit,Color
+0,DAPI0,0,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+1,AF488,0,1,200.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+2,AF555,0,2,1000.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+3,AF647,0,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+4,AF750,0,4,1500.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+5,DAPI10,10,0,10.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+6,vim,10,1,100.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+7,pten,10,2,400.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+8,cd31,10,3,500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+9,r10c5,10,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+10,DAPI11,11,0,2.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+11,r11c2,11,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+12,fibronectine,11,2,20.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+13,pdl1b,11,3,50.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+14,r11c5,11,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+15,DAPI12,12,0,2.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+16,r12c2,12,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+17,cd62l,12,2,500.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+18,pdl1,12,3,300.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+19,r12c5,12,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+20,DAPI13,13,0,2.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+21,r13c2,13,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+22,foxp3,13,2,500.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+23,tbet,13,3,500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+24,r13c5,13,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+25,DAPI14,14,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+26,r14c2,14,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+27,r14c3,14,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+28,gal3,14,3,20.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+29,r14c5,14,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+30,DAPI15,15,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+31,r15c2,15,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+32,r15c3,15,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+33,livarg,15,3,10.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+34,r15c5,15,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+35,DAPI16,16,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+36,r16c2,16,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+37,r16c3,16,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+38,ly6g,16,3,1000.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+39,r16c5,16,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+40,DAPI17,17,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+41,r17c2,17,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+42,r17c3,17,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+43,nkrp1c,17,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+44,r17c5,17,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+45,DAPI18,18,0,10.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+46,asmaB,18,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+47,cd163b,18,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+48,r18c4,18,3,50.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+49,r18c5,18,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+50,DAPI1,1,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+51,b7h3,1,1,200.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+52,b7h4,1,2,350.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+53,ph2ax,1,3,150.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+54,cd44,1,4,200.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+55,DAPI2,2,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+56,cd47,2,1,120.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+57,perk,2,2,400.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+58,pakt,2,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+59,tim3,2,4,100.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+60,DAPI3,3,0,8.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+61,phh3,3,1,100.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+62,ki67,3,2,300.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+63,ccas3,3,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+64,gal9,3,4,150.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+65,DAPI4,4,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+66,colVI,4,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+67,r4c3,4,2,100.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+68,cd19,4,3,300.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+69,epcam,4,4,200.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+70,DAPI5,5,0,7.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+71,r5c2,5,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+72,cd163,5,2,150.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+73,cd45b,5,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+74,gal9b,5,4,100.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+75,DAPI6,6,0,7.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+76,desmine,6,1,100.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+77,cd4,6,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+78,cd8,6,3,100.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+79,cyk,6,4,150.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+80,DAPI7,7,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+81,r7c2,7,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+82,foxp3b,7,2,300.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+83,cd45,7,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+84,ecad,7,4,100.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+85,DAPI8,8,0,7.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+86,asma,8,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+87,cd68,8,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+88,cd86,8,3,700.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+89,elastin,8,4,800.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+90,DAPI9,9,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+91,r9c2,9,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+92,ly6c,9,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+93,cd11c,9,3,150.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+94,erg,9,4,400.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF

mice_df/SetA_metadata/To_analyse_mTumorTMA2s2.ome.tif.csv

@@ -0,0 +1,96 @@
+Channel,Name,Cycle,ChannelIndex,ExposureTime,ExposureTimeUnit,Fluor,AcquisitionMode,IlluminationType,ContrastMethod,ExcitationWavelength,ExcitationWavelengthUnit,EmissionWavelength,EmissionWavelengthUnit,Color
+0,DAPI0,0,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+1,AF488,0,1,200.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+2,AF555,0,2,1000.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+3,AF647,0,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+4,AF750,0,4,1500.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+5,DAPI10,10,0,10.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+6,vim,10,1,100.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+7,pten,10,2,400.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+8,cd31,10,3,500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+9,r10c5,10,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+10,DAPI11,11,0,2.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+11,r11c2,11,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+12,fibronectine,11,2,20.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+13,pdl1b,11,3,50.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+14,r11c5,11,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+15,DAPI12,12,0,2.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+16,r12c2,12,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+17,cd62l,12,2,500.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+18,pdl1,12,3,300.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+19,r12c5,12,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+20,DAPI13,13,0,2.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+21,r13c2,13,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+22,foxp3,13,2,500.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+23,tbet,13,3,500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+24,r13c5,13,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+25,DAPI14,14,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+26,r14c2,14,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+27,r14c3,14,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+28,gal3,14,3,20.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+29,r14c5,14,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+30,DAPI15,15,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+31,r15c2,15,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+32,r15c3,15,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+33,livarg,15,3,10.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+34,r15c5,15,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+35,DAPI16,16,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+36,r16c2,16,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+37,r16c3,16,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+38,ly6g,16,3,1000.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+39,r16c5,16,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+40,DAPI17,17,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+41,r17c2,17,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+42,r17c3,17,2,50.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+43,nkrp1c,17,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+44,r17c5,17,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+45,DAPI18,18,0,10.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+46,asmaB,18,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+47,cd163b,18,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+48,r18c4,18,3,50.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+49,r18c5,18,4,50.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+50,DAPI1,1,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+51,b7h3,1,1,200.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+52,b7h4,1,2,350.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+53,ph2ax,1,3,150.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+54,cd44,1,4,200.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+55,DAPI2,2,0,10.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+56,cd47,2,1,120.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+57,perk,2,2,400.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+58,pakt,2,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+59,tim3,2,4,100.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+60,DAPI3,3,0,8.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+61,phh3,3,1,100.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+62,ki67,3,2,300.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+63,ccas3,3,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+64,gal9,3,4,150.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+65,DAPI4,4,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+66,colVI,4,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+67,r4c3,4,2,100.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+68,cd19,4,3,300.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+69,epcam,4,4,200.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+70,DAPI5,5,0,7.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+71,r5c2,5,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+72,cd163,5,2,150.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+73,cd45b,5,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+74,gal9b,5,4,100.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+75,DAPI6,6,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+76,desmine,6,1,100.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+77,cd4,6,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+78,cd8,6,3,100.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+79,cyk,6,4,150.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+80,DAPI7,7,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+81,r7c2,7,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+82,foxp3b,7,2,300.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+83,cd45,7,3,1500.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+84,ecad,7,4,100.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+85,DAPI8,8,0,7.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+86,asma,8,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+87,cd68,8,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+88,cd86,8,3,700.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+89,elastin,8,4,800.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF
+90,DAPI9,9,0,5.000000,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.000000,nm,465.000000,nm,#FF0000FF
+91,r9c2,9,1,50.000000,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.000000,nm,509.000000,nm,#FF00FF5B
+92,ly6c,9,2,200.000000,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.000000,nm,561.000000,nm,#FFFFAD00
+93,cd11c,9,3,150.000000,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.000000,nm,673.000000,nm,#FFFF0014
+94,erg,9,4,400.000000,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.000000,nm,773.000000,nm,#FF00FFFF

mice_df/SetA_metadata/cellsubtype_color_data.csv

@@ -0,0 +1,13 @@
+rgb,hex,cell_subtype
+"(np.float64(0.6509803921568628), np.float64(0.807843137254902), np.float64(0.8901960784313725))",#a6cee3,DC
+"(np.float64(0.12156862745098039), np.float64(0.47058823529411764), np.float64(0.7058823529411765))",#1f78b4,B
+"(np.float64(0.6980392156862745), np.float64(0.8745098039215686), np.float64(0.5411764705882353))",#b2df8a,TCD4
+"(np.float64(0.2), np.float64(0.6274509803921569), np.float64(0.17254901960784313))",#33a02c,TCD8
+"(np.float64(0.984313725490196), np.float64(0.6039215686274509), np.float64(0.6))",#fb9a99,M1
+"(np.float64(0.8901960784313725), np.float64(0.10196078431372549), np.float64(0.10980392156862745))",#e31a1c,M2
+"(np.float64(0.9921568627450981), np.float64(0.7490196078431373), np.float64(0.43529411764705883))",#fdbf6f,Treg
+"(np.float64(1.0), np.float64(0.4980392156862745), np.float64(0.0))",#ff7f00,IMMUNE_OTHER
+"(np.float64(0.792156862745098), np.float64(0.6980392156862745), np.float64(0.8392156862745098))",#cab2d6,CANCER
+"(np.float64(0.41568627450980394), np.float64(0.23921568627450981), np.float64(0.6039215686274509))",#6a3d9a,αSMA_myCAF
+"(np.float64(1.0), np.float64(1.0), np.float64(0.6))",#ffff99,STROMA_OTHER
+"(np.float64(0.6941176470588235), np.float64(0.34901960784313724), np.float64(0.1568627450980392))",#b15928,ENDOTHELIAL

mice_df/SetA_metadata/celltype_color_data.csv

@@ -0,0 +1,5 @@
+rgb,hex,cell_type
+"(np.float64(0.1333), np.float64(0.5451), np.float64(0.1333))",#228b22,CANCER
+"(np.float64(0.4), np.float64(0.4), np.float64(0.4))",#666666,STROMA
+"(np.float64(1.0), np.float64(1.0), np.float64(0.0))",#ffff00,IMMUNE
+"(np.float64(0.502), np.float64(0.0), np.float64(0.502))",#800080,ENDOTHELIAL

mice_df/SetA_metadata/channel_color_data.csv

@@ -0,0 +1,5 @@
+rgb,hex,Channel
+"(np.float64(0.00784313725490196), np.float64(0.24313725490196078), np.float64(1.0))",#023eff,C2
+"(np.float64(1.0), np.float64(0.48627450980392156), np.float64(0.0))",#ff7c00,C3
+"(np.float64(0.10196078431372549), np.float64(0.788235294117647), np.float64(0.2196078431372549))",#1ac938,C4
+"(np.float64(0.9098039215686274), np.float64(0.0), np.float64(0.043137254901960784))",#e8000b,C5

mice_df/SetA_metadata/combined_metadata.csv

@@ -0,0 +1,191 @@
+Channel,Name,Cycle,ChannelIndex,ExposureTime,ExposureTimeUnit,Fluor,AcquisitionMode,IlluminationType,ContrastMethod,ExcitationWavelength,ExcitationWavelengthUnit,EmissionWavelength,EmissionWavelengthUnit,Color
+0,DAPI0,0,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+1,AF488,0,1,200.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+2,AF555,0,2,1000.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+3,AF647,0,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+4,AF750,0,4,1500.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+5,DAPI10,10,0,10.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+6,vim,10,1,100.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+7,pten,10,2,400.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+8,cd31,10,3,500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+9,r10c5,10,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+10,DAPI11,11,0,2.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+11,r11c2,11,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+12,fibronectine,11,2,20.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+13,pdl1b,11,3,50.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+14,r11c5,11,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+15,DAPI12,12,0,2.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+16,r12c2,12,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+17,cd62l,12,2,500.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+18,pdl1,12,3,300.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+19,r12c5,12,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+20,DAPI13,13,0,2.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+21,r13c2,13,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+22,foxp3,13,2,500.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+23,tbet,13,3,500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+24,r13c5,13,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+25,DAPI14,14,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+26,r14c2,14,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+27,r14c3,14,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+28,gal3,14,3,20.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+29,r14c5,14,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+30,DAPI15,15,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+31,r15c2,15,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+32,r15c3,15,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+33,livarg,15,3,10.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+34,r15c5,15,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+35,DAPI16,16,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+36,r16c2,16,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+37,r16c3,16,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+38,ly6g,16,3,1000.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+39,r16c5,16,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+40,DAPI17,17,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+41,r17c2,17,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+42,r17c3,17,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+43,nkrp1c,17,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+44,r17c5,17,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+45,DAPI18,18,0,10.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+46,asmaB,18,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+47,cd163b,18,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+48,r18c4,18,3,50.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+49,r18c5,18,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+50,DAPI1,1,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+51,b7h3,1,1,200.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+52,b7h4,1,2,350.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+53,ph2ax,1,3,150.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+54,cd44,1,4,200.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+55,DAPI2,2,0,10.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+56,cd47,2,1,120.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+57,perk,2,2,400.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+58,pakt,2,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+59,tim3,2,4,100.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+60,DAPI3,3,0,8.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+61,phh3,3,1,100.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+62,ki67,3,2,300.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+63,ccas3,3,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+64,gal9,3,4,150.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+65,DAPI4,4,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+66,colVI,4,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+67,r4c3,4,2,100.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+68,cd19,4,3,300.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+69,epcam,4,4,200.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+70,DAPI5,5,0,7.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+71,r5c2,5,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+72,cd163,5,2,150.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+73,cd45b,5,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+74,gal9b,5,4,100.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+75,DAPI6,6,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+76,desmine,6,1,100.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+77,cd4,6,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+78,cd8,6,3,100.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+79,cyk,6,4,150.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+80,DAPI7,7,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+81,r7c2,7,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+82,foxp3b,7,2,300.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+83,cd45,7,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+84,ecad,7,4,100.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+85,DAPI8,8,0,7.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+86,asma,8,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+87,cd68,8,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+88,cd86,8,3,700.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+89,elastin,8,4,800.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+90,DAPI9,9,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+91,r9c2,9,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+92,ly6c,9,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+93,cd11c,9,3,150.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+94,erg,9,4,400.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+0,DAPI0,0,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+1,AF488,0,1,200.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+2,AF555,0,2,1000.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+3,AF647,0,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+4,AF750,0,4,1500.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+5,DAPI10,10,0,10.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+6,vim,10,1,100.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+7,pten,10,2,400.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+8,cd31,10,3,500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+9,r10c5,10,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+10,DAPI11,11,0,2.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+11,r11c2,11,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+12,fibronectine,11,2,20.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+13,pdl1b,11,3,50.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+14,r11c5,11,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+15,DAPI12,12,0,2.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+16,r12c2,12,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+17,cd62l,12,2,500.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+18,pdl1,12,3,300.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+19,r12c5,12,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+20,DAPI13,13,0,2.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+21,r13c2,13,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+22,foxp3,13,2,500.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+23,tbet,13,3,500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+24,r13c5,13,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+25,DAPI14,14,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+26,r14c2,14,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+27,r14c3,14,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+28,gal3,14,3,20.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+29,r14c5,14,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+30,DAPI15,15,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+31,r15c2,15,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+32,r15c3,15,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+33,livarg,15,3,10.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+34,r15c5,15,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+35,DAPI16,16,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+36,r16c2,16,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+37,r16c3,16,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+38,ly6g,16,3,1000.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+39,r16c5,16,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+40,DAPI17,17,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+41,r17c2,17,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+42,r17c3,17,2,50.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+43,nkrp1c,17,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+44,r17c5,17,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+45,DAPI18,18,0,10.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+46,asmaB,18,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+47,cd163b,18,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+48,r18c4,18,3,50.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+49,r18c5,18,4,50.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+50,DAPI1,1,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+51,b7h3,1,1,200.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+52,b7h4,1,2,350.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+53,ph2ax,1,3,150.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+54,cd44,1,4,200.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+55,DAPI2,2,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+56,cd47,2,1,120.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+57,perk,2,2,400.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+58,pakt,2,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+59,tim3,2,4,100.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+60,DAPI3,3,0,8.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+61,phh3,3,1,100.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+62,ki67,3,2,300.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+63,ccas3,3,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+64,gal9,3,4,150.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+65,DAPI4,4,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+66,colVI,4,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+67,r4c3,4,2,100.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+68,cd19,4,3,300.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+69,epcam,4,4,200.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+70,DAPI5,5,0,7.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+71,r5c2,5,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+72,cd163,5,2,150.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+73,cd45b,5,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+74,gal9b,5,4,100.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+75,DAPI6,6,0,7.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+76,desmine,6,1,100.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+77,cd4,6,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+78,cd8,6,3,100.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+79,cyk,6,4,150.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+80,DAPI7,7,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+81,r7c2,7,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+82,foxp3b,7,2,300.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+83,cd45,7,3,1500.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+84,ecad,7,4,100.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+85,DAPI8,8,0,7.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+86,asma,8,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+87,cd68,8,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+88,cd86,8,3,700.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+89,elastin,8,4,800.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF
+90,DAPI9,9,0,5.0,ms,DAPI,WideField,Epifluorescence,Fluorescence,353.0,nm,465.0,nm,#FF0000FF
+91,r9c2,9,1,50.0,ms,EGFP,WideField,Epifluorescence,Fluorescence,488.0,nm,509.0,nm,#FF00FF5B
+92,ly6c,9,2,200.0,ms,Cy3,WideField,Epifluorescence,Fluorescence,548.0,nm,561.0,nm,#FFFFAD00
+93,cd11c,9,3,150.0,ms,Cy5,WideField,Epifluorescence,Fluorescence,650.0,nm,673.0,nm,#FFFF0014
+94,erg,9,4,400.0,ms,Cy7,WideField,Epifluorescence,Fluorescence,747.0,nm,773.0,nm,#FF00FFFF

mice_df/SetA_metadata/full_to_short_column_names.csv

@@ -0,0 +1,229 @@
+full_name,short_name
+AF488_Cell_Intensity_Average,AF488_Cell
+AF488_Cytoplasm_Intensity_Average,AF488_Cytoplasm
+AF488_Nucleus_Intensity_Average,AF488_Nucleus
+AF555_Cell_Intensity_Average,AF555_Cell
+AF555_Cytoplasm_Intensity_Average,AF555_Cytoplasm
+AF555_Nucleus_Intensity_Average,AF555_Nucleus
+AF647_Cell_Intensity_Average,AF647_Cell
+AF647_Cytoplasm_Intensity_Average,AF647_Cytoplasm
+AF647_Nucleus_Intensity_Average,AF647_Nucleus
+AF750_Cell_Intensity_Average,AF750_Cell
+AF750_Cytoplasm_Intensity_Average,AF750_Cytoplasm
+AF750_Nucleus_Intensity_Average,AF750_Nucleus
+asma_Cell_Intensity_Average,asma_Cell
+asma_Cytoplasm_Intensity_Average,asma_Cytoplasm
+asma_Nucleus_Intensity_Average,asma_Nucleus
+asmaB_Cell_Intensity_Average,asmaB_Cell
+asmaB_Cytoplasm_Intensity_Average,asmaB_Cytoplasm
+asmaB_Nucleus_Intensity_Average,asmaB_Nucleus
+b7h3_Cell_Intensity_Average,b7h3_Cell
+b7h3_Cytoplasm_Intensity_Average,b7h3_Cytoplasm
+b7h3_Nucleus_Intensity_Average,b7h3_Nucleus
+b7h4_Cell_Intensity_Average,b7h4_Cell
+b7h4_Cytoplasm_Intensity_Average,b7h4_Cytoplasm
+b7h4_Nucleus_Intensity_Average,b7h4_Nucleus
+ccas3_Cell_Intensity_Average,ccas3_Cell
+ccas3_Cytoplasm_Intensity_Average,ccas3_Cytoplasm
+ccas3_Nucleus_Intensity_Average,ccas3_Nucleus
+cd4_Cell_Intensity_Average,cd4_Cell
+cd4_Cytoplasm_Intensity_Average,cd4_Cytoplasm
+cd4_Nucleus_Intensity_Average,cd4_Nucleus
+cd8_Cell_Intensity_Average,cd8_Cell
+cd8_Cytoplasm_Intensity_Average,cd8_Cytoplasm
+cd8_Nucleus_Intensity_Average,cd8_Nucleus
+cd11c_Cell_Intensity_Average,cd11c_Cell
+cd11c_Cytoplasm_Intensity_Average,cd11c_Cytoplasm
+cd11c_Nucleus_Intensity_Average,cd11c_Nucleus
+cd19_Cell_Intensity_Average,cd19_Cell
+cd19_Cytoplasm_Intensity_Average,cd19_Cytoplasm
+cd19_Nucleus_Intensity_Average,cd19_Nucleus
+cd31_Cell_Intensity_Average,cd31_Cell
+cd31_Cytoplasm_Intensity_Average,cd31_Cytoplasm
+cd31_Nucleus_Intensity_Average,cd31_Nucleus
+cd44_Cell_Intensity_Average,cd44_Cell
+cd44_Cytoplasm_Intensity_Average,cd44_Cytoplasm
+cd44_Nucleus_Intensity_Average,cd44_Nucleus
+cd45_Cell_Intensity_Average,cd45_Cell
+cd45_Cytoplasm_Intensity_Average,cd45_Cytoplasm
+cd45_Nucleus_Intensity_Average,cd45_Nucleus
+cd45b_Cell_Intensity_Average,cd45b_Cell
+cd45b_Cytoplasm_Intensity_Average,cd45b_Cytoplasm
+cd45b_Nucleus_Intensity_Average,cd45b_Nucleus
+cd47_Cell_Intensity_Average,cd47_Cell
+cd47_Cytoplasm_Intensity_Average,cd47_Cytoplasm
+cd47_Nucleus_Intensity_Average,cd47_Nucleus
+cd62l_Cell_Intensity_Average,cd62l_Cell
+cd62l_Cytoplasm_Intensity_Average,cd62l_Cytoplasm
+cd62l_Nucleus_Intensity_Average,cd62l_Nucleus
+cd68_Cell_Intensity_Average,cd68_Cell
+cd68_Cytoplasm_Intensity_Average,cd68_Cytoplasm
+cd68_Nucleus_Intensity_Average,cd68_Nucleus
+cd86_Cell_Intensity_Average,cd86_Cell
+cd86_Cytoplasm_Intensity_Average,cd86_Cytoplasm
+cd86_Nucleus_Intensity_Average,cd86_Nucleus
+cd163_Cell_Intensity_Average,cd163_Cell
+cd163_Cytoplasm_Intensity_Average,cd163_Cytoplasm
+cd163_Nucleus_Intensity_Average,cd163_Nucleus
+cd163b_Cell_Intensity_Average,cd163b_Cell
+cd163b_Cytoplasm_Intensity_Average,cd163b_Cytoplasm
+cd163b_Nucleus_Intensity_Average,cd163b_Nucleus
+colVI_Cell_Intensity_Average,colVI_Cell
+colVI_Cytoplasm_Intensity_Average,colVI_Cytoplasm
+colVI_Nucleus_Intensity_Average,colVI_Nucleus
+cyk_Cell_Intensity_Average,cyk_Cell
+cyk_Cytoplasm_Intensity_Average,cyk_Cytoplasm
+cyk_Nucleus_Intensity_Average,cyk_Nucleus
+desmine_Cell_Intensity_Average,desmine_Cell
+desmine_Cytoplasm_Intensity_Average,desmine_Cytoplasm
+desmine_Nucleus_Intensity_Average,desmine_Nucleus
+ecad_Cell_Intensity_Average,ecad_Cell
+ecad_Cytoplasm_Intensity_Average,ecad_Cytoplasm
+ecad_Nucleus_Intensity_Average,ecad_Nucleus
+elastin_Cell_Intensity_Average,elastin_Cell
+elastin_Cytoplasm_Intensity_Average,elastin_Cytoplasm
+elastin_Nucleus_Intensity_Average,elastin_Nucleus
+epcam_Cell_Intensity_Average,epcam_Cell
+epcam_Cytoplasm_Intensity_Average,epcam_Cytoplasm
+epcam_Nucleus_Intensity_Average,epcam_Nucleus
+erg_Cell_Intensity_Average,erg_Cell
+erg_Cytoplasm_Intensity_Average,erg_Cytoplasm
+erg_Nucleus_Intensity_Average,erg_Nucleus
+fibronectine_Cell_Intensity_Average,fibronectine_Cell
+fibronectine_Cytoplasm_Intensity_Average,fibronectine_Cytoplasm
+fibronectine_Nucleus_Intensity_Average,fibronectine_Nucleus
+foxp3_Cell_Intensity_Average,foxp3_Cell
+foxp3_Cytoplasm_Intensity_Average,foxp3_Cytoplasm
+foxp3_Nucleus_Intensity_Average,foxp3_Nucleus
+foxp3b_Cell_Intensity_Average,foxp3b_Cell
+foxp3b_Cytoplasm_Intensity_Average,foxp3b_Cytoplasm
+foxp3b_Nucleus_Intensity_Average,foxp3b_Nucleus
+gal3_Cell_Intensity_Average,gal3_Cell
+gal3_Cytoplasm_Intensity_Average,gal3_Cytoplasm
+gal3_Nucleus_Intensity_Average,gal3_Nucleus
+gal9_Cell_Intensity_Average,gal9_Cell
+gal9_Cytoplasm_Intensity_Average,gal9_Cytoplasm
+gal9_Nucleus_Intensity_Average,gal9_Nucleus
+gal9b_Cell_Intensity_Average,gal9b_Cell
+gal9b_Cytoplasm_Intensity_Average,gal9b_Cytoplasm
+gal9b_Nucleus_Intensity_Average,gal9b_Nucleus
+ki67_Cell_Intensity_Average,ki67_Cell
+ki67_Cytoplasm_Intensity_Average,ki67_Cytoplasm
+ki67_Nucleus_Intensity_Average,ki67_Nucleus
+arg1_Cell_Intensity_Average,arg1_Cell
+arg1_Cytoplasm_Intensity_Average,arg1_Cytoplasm
+arg1_Nucleus_Intensity_Average,arg1_Nucleus
+ly6c_Cell_Intensity_Average,ly6c_Cell
+ly6c_Cytoplasm_Intensity_Average,ly6c_Cytoplasm
+ly6c_Nucleus_Intensity_Average,ly6c_Nucleus
+ly6g_Cell_Intensity_Average,ly6g_Cell
+ly6g_Cytoplasm_Intensity_Average,ly6g_Cytoplasm
+ly6g_Nucleus_Intensity_Average,ly6g_Nucleus
+nkrp1c_Cell_Intensity_Average,nkrp1c_Cell
+nkrp1c_Cytoplasm_Intensity_Average,nkrp1c_Cytoplasm
+nkrp1c_Nucleus_Intensity_Average,nkrp1c_Nucleus
+pakt_Cell_Intensity_Average,pakt_Cell
+pakt_Cytoplasm_Intensity_Average,pakt_Cytoplasm
+pakt_Nucleus_Intensity_Average,pakt_Nucleus
+pdl1_Cell_Intensity_Average,pdl1_Cell
+pdl1_Cytoplasm_Intensity_Average,pdl1_Cytoplasm
+pdl1_Nucleus_Intensity_Average,pdl1_Nucleus
+pdl1b_Cell_Intensity_Average,pdl1b_Cell
+pdl1b_Cytoplasm_Intensity_Average,pdl1b_Cytoplasm
+pdl1b_Nucleus_Intensity_Average,pdl1b_Nucleus
+perk_Cell_Intensity_Average,perk_Cell
+perk_Cytoplasm_Intensity_Average,perk_Cytoplasm
+perk_Nucleus_Intensity_Average,perk_Nucleus
+ph2ax_Cell_Intensity_Average,ph2ax_Cell
+ph2ax_Cytoplasm_Intensity_Average,ph2ax_Cytoplasm
+ph2ax_Nucleus_Intensity_Average,ph2ax_Nucleus
+phh3_Cell_Intensity_Average,phh3_Cell
+phh3_Cytoplasm_Intensity_Average,phh3_Cytoplasm
+phh3_Nucleus_Intensity_Average,phh3_Nucleus
+pten_Cell_Intensity_Average,pten_Cell
+pten_Cytoplasm_Intensity_Average,pten_Cytoplasm
+pten_Nucleus_Intensity_Average,pten_Nucleus
+r4c3_Cell_Intensity_Average,r4c3_Cell
+r4c3_Cytoplasm_Intensity_Average,r4c3_Cytoplasm
+r4c3_Nucleus_Intensity_Average,r4c3_Nucleus
+r5c2_Cell_Intensity_Average,r5c2_Cell
+r5c2_Cytoplasm_Intensity_Average,r5c2_Cytoplasm
+r5c2_Nucleus_Intensity_Average,r5c2_Nucleus
+r7c2_Cell_Intensity_Average,r7c2_Cell
+r7c2_Cytoplasm_Intensity_Average,r7c2_Cytoplasm
+r7c2_Nucleus_Intensity_Average,r7c2_Nucleus
+r9c2_Cell_Intensity_Average,r9c2_Cell
+r9c2_Cytoplasm_Intensity_Average,r9c2_Cytoplasm
+r9c2_Nucleus_Intensity_Average,r9c2_Nucleus
+r10c5_Cell_Intensity_Average,r10c5_Cell
+r10c5_Cytoplasm_Intensity_Average,r10c5_Cytoplasm
+r10c5_Nucleus_Intensity_Average,r10c5_Nucleus
+r11c2_Cell_Intensity_Average,r11c2_Cell
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+r12c2_Cell_Intensity_Average,r12c2_Cell
+r12c2_Cytoplasm_Intensity_Average,r12c2_Cytoplasm
+r12c2_Nucleus_Intensity_Average,r12c2_Nucleus
+r12c5_Cell_Intensity_Average,r12c5_Cell
+r12c5_Cytoplasm_Intensity_Average,r12c5_Cytoplasm
+r12c5_Nucleus_Intensity_Average,r12c5_Nucleus
+r13c2_Cell_Intensity_Average,r13c2_Cell
+r13c2_Cytoplasm_Intensity_Average,r13c2_Cytoplasm
+r13c2_Nucleus_Intensity_Average,r13c2_Nucleus
+r13c5_Cell_Intensity_Average,r13c5_Cell
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+r15c2_Cell_Intensity_Average,r15c2_Cell
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+r16c3_Cell_Intensity_Average,r16c3_Cell
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+r16c5_Cell_Intensity_Average,r16c5_Cell
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+r17c2_Cell_Intensity_Average,r17c2_Cell
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+r18c5_Cell_Intensity_Average,r18c5_Cell
+r18c5_Cytoplasm_Intensity_Average,r18c5_Cytoplasm
+r18c5_Nucleus_Intensity_Average,r18c5_Nucleus
+tbet_Cell_Intensity_Average,tbet_Cell
+tbet_Cytoplasm_Intensity_Average,tbet_Cytoplasm
+tbet_Nucleus_Intensity_Average,tbet_Nucleus
+tim3_Cell_Intensity_Average,tim3_Cell
+tim3_Cytoplasm_Intensity_Average,tim3_Cytoplasm
+tim3_Nucleus_Intensity_Average,tim3_Nucleus
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+vim_Cytoplasm_Intensity_Average,vim_Cytoplasm
+vim_Nucleus_Intensity_Average,vim_Nucleus

mice_df/SetA_metadata/immunecheckpoint_color_data.csv

@@ -0,0 +1,6 @@
+rgb,hex,immune_checkpoint
+"(np.float64(0.9677975592919913), np.float64(0.44127456009157356), np.float64(0.5358103155058701))",#f77189,B7H4
+"(np.float64(0.3126890019504329), np.float64(0.6928754610296064), np.float64(0.1923704830330379))",#50b131,PDL1
+"(np.float64(0.23299120924703914), np.float64(0.639586552066035), np.float64(0.9260706093977744))",#3ba3ec,PD1
+"(np.float64(0.6402432806212122), np.float64(0.56707501056059), np.float64(0.36409039926945397))",#a3915d,B7H4_PDL1
+"(np.float64(0.5044925901631545), np.float64(0.5912455243957383), np.float64(0.5514171359788941))",#81978d,None

mice_df/SetA_metadata/marker_intensity_metadata.csv

@@ -0,0 +1,229 @@
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+R12,cd19,300,C4,cd19,cd19_Cell_Intensity_Average,cd19,cell
+R12,cd19,300,C4,cd19,cd19_Cytoplasm_Intensity_Average,cd19,cytoplasm
+R12,cd19,300,C4,cd19,cd19_Nucleus_Intensity_Average,cd19,nucleus
+R12,epcam,200,C5,epcam,epcam_Cell_Intensity_Average,epcam,cell
+R12,epcam,200,C5,epcam,epcam_Cytoplasm_Intensity_Average,epcam,cytoplasm
+R12,epcam,200,C5,epcam,epcam_Nucleus_Intensity_Average,epcam,nucleus
+R13,r5c2,50,C2,r5c2,r5c2_Cell_Intensity_Average,r5c2,cell
+R13,r5c2,50,C2,r5c2,r5c2_Cytoplasm_Intensity_Average,r5c2,cytoplasm
+R13,r5c2,50,C2,r5c2,r5c2_Nucleus_Intensity_Average,r5c2,nucleus
+R13,cd163,150,C3,cd163,cd163_Cell_Intensity_Average,cd163,cell
+R13,cd163,150,C3,cd163,cd163_Cytoplasm_Intensity_Average,cd163,cytoplasm
+R13,cd163,150,C3,cd163,cd163_Nucleus_Intensity_Average,cd163,nucleus
+R13,cd45b,1500,C4,cd45b,cd45b_Cell_Intensity_Average,cd45b,cell
+R13,cd45b,1500,C4,cd45b,cd45b_Cytoplasm_Intensity_Average,cd45b,cytoplasm
+R13,cd45b,1500,C4,cd45b,cd45b_Nucleus_Intensity_Average,cd45b,nucleus
+R13,gal9b,100,C5,gal9b,gal9b_Cell_Intensity_Average,gal9b,cell
+R13,gal9b,100,C5,gal9b,gal9b_Cytoplasm_Intensity_Average,gal9b,cytoplasm
+R13,gal9b,100,C5,gal9b,gal9b_Nucleus_Intensity_Average,gal9b,nucleus
+R14,desmine,100,C2,desmine,desmine_Cell_Intensity_Average,desmine,cell
+R14,desmine,100,C2,desmine,desmine_Cytoplasm_Intensity_Average,desmine,cytoplasm
+R14,desmine,100,C2,desmine,desmine_Nucleus_Intensity_Average,desmine,nucleus
+R14,cd4,200,C3,cd4,cd4_Cell_Intensity_Average,cd4,cell
+R14,cd4,200,C3,cd4,cd4_Cytoplasm_Intensity_Average,cd4,cytoplasm
+R14,cd4,200,C3,cd4,cd4_Nucleus_Intensity_Average,cd4,nucleus
+R14,cd8,100,C4,cd8,cd8_Cell_Intensity_Average,cd8,cell
+R14,cd8,100,C4,cd8,cd8_Cytoplasm_Intensity_Average,cd8,cytoplasm
+R14,cd8,100,C4,cd8,cd8_Nucleus_Intensity_Average,cd8,nucleus
+R14,cyk,150,C5,cyk,cyk_Cell_Intensity_Average,cyk,cell
+R14,cyk,150,C5,cyk,cyk_Cytoplasm_Intensity_Average,cyk,cytoplasm
+R14,cyk,150,C5,cyk,cyk_Nucleus_Intensity_Average,cyk,nucleus
+R15,r7c2,50,C2,r7c2,r7c2_Cell_Intensity_Average,r7c2,cell
+R15,r7c2,50,C2,r7c2,r7c2_Cytoplasm_Intensity_Average,r7c2,cytoplasm
+R15,r7c2,50,C2,r7c2,r7c2_Nucleus_Intensity_Average,r7c2,nucleus
+R15,foxp3b,300,C3,foxp3b,foxp3b_Cell_Intensity_Average,foxp3b,cell
+R15,foxp3b,300,C3,foxp3b,foxp3b_Cytoplasm_Intensity_Average,foxp3b,cytoplasm
+R15,foxp3b,300,C3,foxp3b,foxp3b_Nucleus_Intensity_Average,foxp3b,nucleus
+R15,cd45,1500,C4,cd45,cd45_Cell_Intensity_Average,cd45,cell
+R15,cd45,1500,C4,cd45,cd45_Cytoplasm_Intensity_Average,cd45,cytoplasm
+R15,cd45,1500,C4,cd45,cd45_Nucleus_Intensity_Average,cd45,nucleus
+R15,ecad,100,C5,ecad,ecad_Cell_Intensity_Average,ecad,cell
+R15,ecad,100,C5,ecad,ecad_Cytoplasm_Intensity_Average,ecad,cytoplasm
+R15,ecad,100,C5,ecad,ecad_Nucleus_Intensity_Average,ecad,nucleus
+R16,asma,50,C2,asma,asma_Cell_Intensity_Average,asma,cell
+R16,asma,50,C2,asma,asma_Cytoplasm_Intensity_Average,asma,cytoplasm
+R16,asma,50,C2,asma,asma_Nucleus_Intensity_Average,asma,nucleus
+R16,cd68,200,C3,cd68,cd68_Cell_Intensity_Average,cd68,cell
+R16,cd68,200,C3,cd68,cd68_Cytoplasm_Intensity_Average,cd68,cytoplasm
+R16,cd68,200,C3,cd68,cd68_Nucleus_Intensity_Average,cd68,nucleus
+R16,cd86,700,C4,cd86,cd86_Cell_Intensity_Average,cd86,cell
+R16,cd86,700,C4,cd86,cd86_Cytoplasm_Intensity_Average,cd86,cytoplasm
+R16,cd86,700,C4,cd86,cd86_Nucleus_Intensity_Average,cd86,nucleus
+R16,elastin,800,C5,elastin,elastin_Cell_Intensity_Average,elastin,cell
+R16,elastin,800,C5,elastin,elastin_Cytoplasm_Intensity_Average,elastin,cytoplasm
+R16,elastin,800,C5,elastin,elastin_Nucleus_Intensity_Average,elastin,nucleus
+R17,r9c2,50,C2,r9c2,r9c2_Cell_Intensity_Average,r9c2,cell
+R17,r9c2,50,C2,r9c2,r9c2_Cytoplasm_Intensity_Average,r9c2,cytoplasm
+R17,r9c2,50,C2,r9c2,r9c2_Nucleus_Intensity_Average,r9c2,nucleus
+R17,ly6c,200,C3,ly6c,ly6c_Cell_Intensity_Average,ly6c,cell
+R17,ly6c,200,C3,ly6c,ly6c_Cytoplasm_Intensity_Average,ly6c,cytoplasm
+R17,ly6c,200,C3,ly6c,ly6c_Nucleus_Intensity_Average,ly6c,nucleus
+R17,cd11c,150,C4,cd11c,cd11c_Cell_Intensity_Average,cd11c,cell
+R17,cd11c,150,C4,cd11c,cd11c_Cytoplasm_Intensity_Average,cd11c,cytoplasm
+R17,cd11c,150,C4,cd11c,cd11c_Nucleus_Intensity_Average,cd11c,nucleus
+R17,erg,400,C5,erg,erg_Cell_Intensity_Average,erg,cell
+R17,erg,400,C5,erg,erg_Cytoplasm_Intensity_Average,erg,cytoplasm
+R17,erg,400,C5,erg,erg_Nucleus_Intensity_Average,erg,nucleus
+R18,asmaB,50,C2,asmab,asmaB_Cell_Intensity_Average,asmaB,cell
+R18,asmaB,50,C2,asmab,asmaB_Cytoplasm_Intensity_Average,asmaB,cytoplasm
+R18,asmaB,50,C2,asmab,asmaB_Nucleus_Intensity_Average,asmaB,nucleus
+R18,cd163b,200,C3,cd163b,cd163b_Cell_Intensity_Average,cd163b,cell
+R18,cd163b,200,C3,cd163b,cd163b_Cytoplasm_Intensity_Average,cd163b,cytoplasm
+R18,cd163b,200,C3,cd163b,cd163b_Nucleus_Intensity_Average,cd163b,nucleus
+R18,r18c4,50,C4,r18c4,r18c4_Cell_Intensity_Average,r18c4,cell
+R18,r18c4,50,C4,r18c4,r18c4_Cytoplasm_Intensity_Average,r18c4,cytoplasm
+R18,r18c4,50,C4,r18c4,r18c4_Nucleus_Intensity_Average,r18c4,nucleus
+R18,r18c5,50,C5,r18c5,r18c5_Cell_Intensity_Average,r18c5,cell
+R18,r18c5,50,C5,r18c5,r18c5_Cytoplasm_Intensity_Average,r18c5,cytoplasm
+R18,r18c5,50,C5,r18c5,r18c5_Nucleus_Intensity_Average,r18c5,nucleus

mice_df/SetA_metadata/not_intensities.csv

@@ -0,0 +1,9 @@
+Cell_Index
+Analysis_Id
+Cell_Size
+Nuc_Y_Inv
+Nuc_X
+Nucleus_Roundness
+Nucleus_Size
+ROI_index
+Sample_ID

mice_df/SetA_metadata/round_color_data.csv

@@ -0,0 +1,20 @@
+rgb,hex,Round
+"(np.float64(0.28685356234627135), np.float64(0.13009829239513535), np.float64(0.23110332132624437))",#49213b,R0
+"(np.float64(0.32894799981466516), np.float64(0.16236785356993752), np.float64(0.29972455554786764))",#54294c,R1
+"(np.float64(0.3595452908237039), np.float64(0.19484840950855586), np.float64(0.3629192385519272))",#5c325d,R2
+"(np.float64(0.38340305173641687), np.float64(0.23089185620451036), np.float64(0.4253843382289242))",#623b6c,R3
+"(np.float64(0.40275807064425834), np.float64(0.27516884507936407), np.float64(0.49161845852222763))",#67467d,R4
+"(np.float64(0.4148448736793292), np.float64(0.31860443127475774), np.float64(0.5465372645670163))",#6a518b,R5
+"(np.float64(0.423257488358997), np.float64(0.36499877776808554), np.float64(0.5956068004687212))",#6c5d98,R6
+"(np.float64(0.43019385750583966), np.float64(0.4192659274030052), np.float64(0.6421261413992846))",#6e6ba4,R7
+"(np.float64(0.43610789923067783), np.float64(0.46971432175876515), np.float64(0.6762654178638234))",#6f78ac,R8
+"(np.float64(0.4444462906865238), np.float64(0.5264664993764805), np.float64(0.7056321892616532))",#7186b4,R9
+"(np.float64(0.45528190844578587), np.float64(0.5771828879276322), np.float64(0.7249115237408889))",#7493b9,R10
+"(np.float64(0.47071031341348774), np.float64(0.6266417954024708), np.float64(0.7384097571290551))",#78a0bc,R11
+"(np.float64(0.49455483010334667), np.float64(0.6791451643708465), np.float64(0.748276197808291))",#7eadbf,R12
+"(np.float64(0.5228240791906859), np.float64(0.7234585216245827), np.float64(0.7543528888888889))",#85b8c0,R13
+"(np.float64(0.5621465457805094), np.float64(0.768815728115705), np.float64(0.7603362833012097))",#8fc4c2,R14
+"(np.float64(0.6044508438778833), np.float64(0.8058535554110277), np.float64(0.7671590053476488))",#9acdc4,R15
+"(np.float64(0.6526394954370289), np.float64(0.8392780197692613), np.float64(0.7773143318599747))",#a6d6c6,R16
+"(np.float64(0.7117701866925481), np.float64(0.8724553697665751), np.float64(0.7946038740331417))",#b6decb,R17
+"(np.float64(0.7684256891219349), np.float64(0.8992667116749021), np.float64(0.8171383269422353))",#c4e5d0,R18

mice_df/SetA_metadata/sample_color_data.csv

@@ -0,0 +1,6 @@
+rgb,hex,Sample_ID
+"(np.float64(0.16470588235294117), np.float64(0.16470588235294117), np.float64(0.16470588235294117))",#2a2a2a,TMA2s1_data.csv
+"(np.float64(0.3333333333333333), np.float64(0.3333333333333333), np.float64(0.3333333333333333))",#555555,TMA1s2_data.csv
+"(np.float64(0.5019607843137255), np.float64(0.5019607843137255), np.float64(0.5019607843137255))",#808080,TMA2s2_data.csv
+"(np.float64(0.6666666666666666), np.float64(0.6666666666666666), np.float64(0.6666666666666666))",#aaaaaa,TMA1s1_data.csv
+"(np.float64(0.8352941176470589), np.float64(0.8352941176470589), np.float64(0.8352941176470589))",#d5d5d5,mTMA_data.csv

mice_df/SetA_metadata/short_to_full_column_names.csv

@@ -0,0 +1,229 @@
+short_name,full_name
+AF488_Cell,AF488_Cell_Intensity_Average
+AF488_Cytoplasm,AF488_Cytoplasm_Intensity_Average
+AF488_Nucleus,AF488_Nucleus_Intensity_Average
+AF555_Cell,AF555_Cell_Intensity_Average
+AF555_Cytoplasm,AF555_Cytoplasm_Intensity_Average
+AF555_Nucleus,AF555_Nucleus_Intensity_Average
+AF647_Cell,AF647_Cell_Intensity_Average
+AF647_Cytoplasm,AF647_Cytoplasm_Intensity_Average
+AF647_Nucleus,AF647_Nucleus_Intensity_Average
+AF750_Cell,AF750_Cell_Intensity_Average
+AF750_Cytoplasm,AF750_Cytoplasm_Intensity_Average
+AF750_Nucleus,AF750_Nucleus_Intensity_Average
+asma_Cell,asma_Cell_Intensity_Average
+asma_Cytoplasm,asma_Cytoplasm_Intensity_Average
+asma_Nucleus,asma_Nucleus_Intensity_Average
+asmaB_Cell,asmaB_Cell_Intensity_Average
+asmaB_Cytoplasm,asmaB_Cytoplasm_Intensity_Average
+asmaB_Nucleus,asmaB_Nucleus_Intensity_Average
+b7h3_Cell,b7h3_Cell_Intensity_Average
+b7h3_Cytoplasm,b7h3_Cytoplasm_Intensity_Average
+b7h3_Nucleus,b7h3_Nucleus_Intensity_Average
+b7h4_Cell,b7h4_Cell_Intensity_Average
+b7h4_Cytoplasm,b7h4_Cytoplasm_Intensity_Average
+b7h4_Nucleus,b7h4_Nucleus_Intensity_Average
+ccas3_Cell,ccas3_Cell_Intensity_Average
+ccas3_Cytoplasm,ccas3_Cytoplasm_Intensity_Average
+ccas3_Nucleus,ccas3_Nucleus_Intensity_Average
+cd4_Cell,cd4_Cell_Intensity_Average
+cd4_Cytoplasm,cd4_Cytoplasm_Intensity_Average
+cd4_Nucleus,cd4_Nucleus_Intensity_Average
+cd8_Cell,cd8_Cell_Intensity_Average
+cd8_Cytoplasm,cd8_Cytoplasm_Intensity_Average
+cd8_Nucleus,cd8_Nucleus_Intensity_Average
+cd11c_Cell,cd11c_Cell_Intensity_Average
+cd11c_Cytoplasm,cd11c_Cytoplasm_Intensity_Average
+cd11c_Nucleus,cd11c_Nucleus_Intensity_Average
+cd19_Cell,cd19_Cell_Intensity_Average
+cd19_Cytoplasm,cd19_Cytoplasm_Intensity_Average
+cd19_Nucleus,cd19_Nucleus_Intensity_Average
+cd31_Cell,cd31_Cell_Intensity_Average
+cd31_Cytoplasm,cd31_Cytoplasm_Intensity_Average
+cd31_Nucleus,cd31_Nucleus_Intensity_Average
+cd44_Cell,cd44_Cell_Intensity_Average
+cd44_Cytoplasm,cd44_Cytoplasm_Intensity_Average
+cd44_Nucleus,cd44_Nucleus_Intensity_Average
+cd45_Cell,cd45_Cell_Intensity_Average
+cd45_Cytoplasm,cd45_Cytoplasm_Intensity_Average
+cd45_Nucleus,cd45_Nucleus_Intensity_Average
+cd45b_Cell,cd45b_Cell_Intensity_Average
+cd45b_Cytoplasm,cd45b_Cytoplasm_Intensity_Average
+cd45b_Nucleus,cd45b_Nucleus_Intensity_Average
+cd47_Cell,cd47_Cell_Intensity_Average
+cd47_Cytoplasm,cd47_Cytoplasm_Intensity_Average
+cd47_Nucleus,cd47_Nucleus_Intensity_Average
+cd62l_Cell,cd62l_Cell_Intensity_Average
+cd62l_Cytoplasm,cd62l_Cytoplasm_Intensity_Average
+cd62l_Nucleus,cd62l_Nucleus_Intensity_Average
+cd68_Cell,cd68_Cell_Intensity_Average
+cd68_Cytoplasm,cd68_Cytoplasm_Intensity_Average
+cd68_Nucleus,cd68_Nucleus_Intensity_Average
+cd86_Cell,cd86_Cell_Intensity_Average
+cd86_Cytoplasm,cd86_Cytoplasm_Intensity_Average
+cd86_Nucleus,cd86_Nucleus_Intensity_Average
+cd163_Cell,cd163_Cell_Intensity_Average
+cd163_Cytoplasm,cd163_Cytoplasm_Intensity_Average
+cd163_Nucleus,cd163_Nucleus_Intensity_Average
+cd163b_Cell,cd163b_Cell_Intensity_Average
+cd163b_Cytoplasm,cd163b_Cytoplasm_Intensity_Average
+cd163b_Nucleus,cd163b_Nucleus_Intensity_Average
+colVI_Cell,colVI_Cell_Intensity_Average
+colVI_Cytoplasm,colVI_Cytoplasm_Intensity_Average
+colVI_Nucleus,colVI_Nucleus_Intensity_Average
+cyk_Cell,cyk_Cell_Intensity_Average
+cyk_Cytoplasm,cyk_Cytoplasm_Intensity_Average
+cyk_Nucleus,cyk_Nucleus_Intensity_Average
+desmine_Cell,desmine_Cell_Intensity_Average
+desmine_Cytoplasm,desmine_Cytoplasm_Intensity_Average
+desmine_Nucleus,desmine_Nucleus_Intensity_Average
+ecad_Cell,ecad_Cell_Intensity_Average
+ecad_Cytoplasm,ecad_Cytoplasm_Intensity_Average
+ecad_Nucleus,ecad_Nucleus_Intensity_Average
+elastin_Cell,elastin_Cell_Intensity_Average
+elastin_Cytoplasm,elastin_Cytoplasm_Intensity_Average
+elastin_Nucleus,elastin_Nucleus_Intensity_Average
+epcam_Cell,epcam_Cell_Intensity_Average
+epcam_Cytoplasm,epcam_Cytoplasm_Intensity_Average
+epcam_Nucleus,epcam_Nucleus_Intensity_Average
+erg_Cell,erg_Cell_Intensity_Average
+erg_Cytoplasm,erg_Cytoplasm_Intensity_Average
+erg_Nucleus,erg_Nucleus_Intensity_Average
+fibronectine_Cell,fibronectine_Cell_Intensity_Average
+fibronectine_Cytoplasm,fibronectine_Cytoplasm_Intensity_Average
+fibronectine_Nucleus,fibronectine_Nucleus_Intensity_Average
+foxp3_Cell,foxp3_Cell_Intensity_Average
+foxp3_Cytoplasm,foxp3_Cytoplasm_Intensity_Average
+foxp3_Nucleus,foxp3_Nucleus_Intensity_Average
+foxp3b_Cell,foxp3b_Cell_Intensity_Average
+foxp3b_Cytoplasm,foxp3b_Cytoplasm_Intensity_Average
+foxp3b_Nucleus,foxp3b_Nucleus_Intensity_Average
+gal3_Cell,gal3_Cell_Intensity_Average
+gal3_Cytoplasm,gal3_Cytoplasm_Intensity_Average
+gal3_Nucleus,gal3_Nucleus_Intensity_Average
+gal9_Cell,gal9_Cell_Intensity_Average
+gal9_Cytoplasm,gal9_Cytoplasm_Intensity_Average
+gal9_Nucleus,gal9_Nucleus_Intensity_Average
+gal9b_Cell,gal9b_Cell_Intensity_Average
+gal9b_Cytoplasm,gal9b_Cytoplasm_Intensity_Average
+gal9b_Nucleus,gal9b_Nucleus_Intensity_Average
+ki67_Cell,ki67_Cell_Intensity_Average
+ki67_Cytoplasm,ki67_Cytoplasm_Intensity_Average
+ki67_Nucleus,ki67_Nucleus_Intensity_Average
+arg1_Cell,arg1_Cell_Intensity_Average
+arg1_Cytoplasm,arg1_Cytoplasm_Intensity_Average
+arg1_Nucleus,arg1_Nucleus_Intensity_Average
+ly6c_Cell,ly6c_Cell_Intensity_Average
+ly6c_Cytoplasm,ly6c_Cytoplasm_Intensity_Average
+ly6c_Nucleus,ly6c_Nucleus_Intensity_Average
+ly6g_Cell,ly6g_Cell_Intensity_Average
+ly6g_Cytoplasm,ly6g_Cytoplasm_Intensity_Average
+ly6g_Nucleus,ly6g_Nucleus_Intensity_Average
+nkrp1c_Cell,nkrp1c_Cell_Intensity_Average
+nkrp1c_Cytoplasm,nkrp1c_Cytoplasm_Intensity_Average
+nkrp1c_Nucleus,nkrp1c_Nucleus_Intensity_Average
+pakt_Cell,pakt_Cell_Intensity_Average
+pakt_Cytoplasm,pakt_Cytoplasm_Intensity_Average
+pakt_Nucleus,pakt_Nucleus_Intensity_Average
+pdl1_Cell,pdl1_Cell_Intensity_Average
+pdl1_Cytoplasm,pdl1_Cytoplasm_Intensity_Average
+pdl1_Nucleus,pdl1_Nucleus_Intensity_Average
+pdl1b_Cell,pdl1b_Cell_Intensity_Average
+pdl1b_Cytoplasm,pdl1b_Cytoplasm_Intensity_Average
+pdl1b_Nucleus,pdl1b_Nucleus_Intensity_Average
+perk_Cell,perk_Cell_Intensity_Average
+perk_Cytoplasm,perk_Cytoplasm_Intensity_Average
+perk_Nucleus,perk_Nucleus_Intensity_Average
+ph2ax_Cell,ph2ax_Cell_Intensity_Average
+ph2ax_Cytoplasm,ph2ax_Cytoplasm_Intensity_Average
+ph2ax_Nucleus,ph2ax_Nucleus_Intensity_Average
+phh3_Cell,phh3_Cell_Intensity_Average
+phh3_Cytoplasm,phh3_Cytoplasm_Intensity_Average
+phh3_Nucleus,phh3_Nucleus_Intensity_Average
+pten_Cell,pten_Cell_Intensity_Average
+pten_Cytoplasm,pten_Cytoplasm_Intensity_Average
+pten_Nucleus,pten_Nucleus_Intensity_Average
+r4c3_Cell,r4c3_Cell_Intensity_Average
+r4c3_Cytoplasm,r4c3_Cytoplasm_Intensity_Average
+r4c3_Nucleus,r4c3_Nucleus_Intensity_Average
+r5c2_Cell,r5c2_Cell_Intensity_Average
+r5c2_Cytoplasm,r5c2_Cytoplasm_Intensity_Average
+r5c2_Nucleus,r5c2_Nucleus_Intensity_Average
+r7c2_Cell,r7c2_Cell_Intensity_Average
+r7c2_Cytoplasm,r7c2_Cytoplasm_Intensity_Average
+r7c2_Nucleus,r7c2_Nucleus_Intensity_Average
+r9c2_Cell,r9c2_Cell_Intensity_Average
+r9c2_Cytoplasm,r9c2_Cytoplasm_Intensity_Average
+r9c2_Nucleus,r9c2_Nucleus_Intensity_Average
+r10c5_Cell,r10c5_Cell_Intensity_Average
+r10c5_Cytoplasm,r10c5_Cytoplasm_Intensity_Average
+r10c5_Nucleus,r10c5_Nucleus_Intensity_Average
+r11c2_Cell,r11c2_Cell_Intensity_Average
+r11c2_Cytoplasm,r11c2_Cytoplasm_Intensity_Average
+r11c2_Nucleus,r11c2_Nucleus_Intensity_Average
+r11c5_Cell,r11c5_Cell_Intensity_Average
+r11c5_Cytoplasm,r11c5_Cytoplasm_Intensity_Average
+r11c5_Nucleus,r11c5_Nucleus_Intensity_Average
+r12c2_Cell,r12c2_Cell_Intensity_Average
+r12c2_Cytoplasm,r12c2_Cytoplasm_Intensity_Average
+r12c2_Nucleus,r12c2_Nucleus_Intensity_Average
+r12c5_Cell,r12c5_Cell_Intensity_Average
+r12c5_Cytoplasm,r12c5_Cytoplasm_Intensity_Average
+r12c5_Nucleus,r12c5_Nucleus_Intensity_Average
+r13c2_Cell,r13c2_Cell_Intensity_Average
+r13c2_Cytoplasm,r13c2_Cytoplasm_Intensity_Average
+r13c2_Nucleus,r13c2_Nucleus_Intensity_Average
+r13c5_Cell,r13c5_Cell_Intensity_Average
+r13c5_Cytoplasm,r13c5_Cytoplasm_Intensity_Average
+r13c5_Nucleus,r13c5_Nucleus_Intensity_Average
+r14c2_Cell,r14c2_Cell_Intensity_Average
+r14c2_Cytoplasm,r14c2_Cytoplasm_Intensity_Average
+r14c2_Nucleus,r14c2_Nucleus_Intensity_Average
+r14c3_Cell,r14c3_Cell_Intensity_Average
+r14c3_Cytoplasm,r14c3_Cytoplasm_Intensity_Average
+r14c3_Nucleus,r14c3_Nucleus_Intensity_Average
+r14c5_Cell,r14c5_Cell_Intensity_Average
+r14c5_Cytoplasm,r14c5_Cytoplasm_Intensity_Average
+r14c5_Nucleus,r14c5_Nucleus_Intensity_Average
+r15c2_Cell,r15c2_Cell_Intensity_Average
+r15c2_Cytoplasm,r15c2_Cytoplasm_Intensity_Average
+r15c2_Nucleus,r15c2_Nucleus_Intensity_Average
+r15c3_Cell,r15c3_Cell_Intensity_Average
+r15c3_Cytoplasm,r15c3_Cytoplasm_Intensity_Average
+r15c3_Nucleus,r15c3_Nucleus_Intensity_Average
+r15c5_Cell,r15c5_Cell_Intensity_Average
+r15c5_Cytoplasm,r15c5_Cytoplasm_Intensity_Average
+r15c5_Nucleus,r15c5_Nucleus_Intensity_Average
+r16c2_Cell,r16c2_Cell_Intensity_Average
+r16c2_Cytoplasm,r16c2_Cytoplasm_Intensity_Average
+r16c2_Nucleus,r16c2_Nucleus_Intensity_Average
+r16c3_Cell,r16c3_Cell_Intensity_Average
+r16c3_Cytoplasm,r16c3_Cytoplasm_Intensity_Average
+r16c3_Nucleus,r16c3_Nucleus_Intensity_Average
+r16c5_Cell,r16c5_Cell_Intensity_Average
+r16c5_Cytoplasm,r16c5_Cytoplasm_Intensity_Average
+r16c5_Nucleus,r16c5_Nucleus_Intensity_Average
+r17c2_Cell,r17c2_Cell_Intensity_Average
+r17c2_Cytoplasm,r17c2_Cytoplasm_Intensity_Average
+r17c2_Nucleus,r17c2_Nucleus_Intensity_Average
+r17c3_Cell,r17c3_Cell_Intensity_Average
+r17c3_Cytoplasm,r17c3_Cytoplasm_Intensity_Average
+r17c3_Nucleus,r17c3_Nucleus_Intensity_Average
+r17c5_Cell,r17c5_Cell_Intensity_Average
+r17c5_Cytoplasm,r17c5_Cytoplasm_Intensity_Average
+r17c5_Nucleus,r17c5_Nucleus_Intensity_Average
+r18c4_Cell,r18c4_Cell_Intensity_Average
+r18c4_Cytoplasm,r18c4_Cytoplasm_Intensity_Average
+r18c4_Nucleus,r18c4_Nucleus_Intensity_Average
+r18c5_Cell,r18c5_Cell_Intensity_Average
+r18c5_Cytoplasm,r18c5_Cytoplasm_Intensity_Average
+r18c5_Nucleus,r18c5_Nucleus_Intensity_Average
+tbet_Cell,tbet_Cell_Intensity_Average
+tbet_Cytoplasm,tbet_Cytoplasm_Intensity_Average
+tbet_Nucleus,tbet_Nucleus_Intensity_Average
+tim3_Cell,tim3_Cell_Intensity_Average
+tim3_Cytoplasm,tim3_Cytoplasm_Intensity_Average
+tim3_Nucleus,tim3_Nucleus_Intensity_Average
+vim_Cell,vim_Cell_Intensity_Average
+vim_Cytoplasm,vim_Cytoplasm_Intensity_Average
+vim_Nucleus,vim_Nucleus_Intensity_Average