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docs: add note about ZeroGPU

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  1. app.py +12 -10
app.py CHANGED
@@ -696,7 +696,7 @@ with gr.Blocks(
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  gr.Markdown(
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  f"""
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- # πŸš€ _De Novo_ Peptide Sequencing with InstaNovo
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  Upload your mass spectrometry data file (.mgf, .mzml, or .mzxml) and get peptide sequence predictions.
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  Choose your prediction method and decoding options.
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@@ -710,12 +710,9 @@ with gr.Blocks(
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  * **Transformer Decoding Methods:**
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  * **Greedy Search:** use this for optimal performance, has similar performance as Knapsack Beam Search at 5% FDR.
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  * **Knapsack Beam Search:** use this for the best results and highest peptide recall, but is about 10x slower than Greedy Search.
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- * `delta_mass_ppm` shows the lowest absolute precursor mass error (ppm) across isotopes 0-1 for the final sequence.
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  * Check logs for progress, especially for large files or slower methods.
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- **Links:**
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- * [InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments](https://www.nature.com/articles/s42256-025-01019-5), Eloff, Kalogeropoulos et al. 2025, Nature Machine Intelligence.
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- * [GitHub Repository for InstaNovo](https://github.com/instadeepai/instanovo)
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  """,
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  elem_classes="feedback"
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  )
@@ -796,11 +793,16 @@ with gr.Blocks(
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  with gr.Accordion("Application Logs", open=True):
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  log_display = Log(log_file, dark=True, height=300)
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  gr.Markdown(
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  value="""
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- If you use InstaNovo in your research, please cite:
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-
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- ```bibtex
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  @article{eloff_kalogeropoulos_2025_instanovo,
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  title = {InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments},
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  author = {Kevin Eloff and Konstantinos Kalogeropoulos and Amandla Mabona and Oliver Morell and Rachel Catzel and
@@ -815,9 +817,9 @@ If you use InstaNovo in your research, please cite:
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  doi = {10.1038/s42256-025-01019-5},
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  url = {https://www.nature.com/articles/s42256-025-01019-5}
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  }
 
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  """,
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- show_copy_button=True,
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- label="If you use InstaNovo in your research, please cite:"
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  )
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  # --- Launch the App ---
 
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  gr.Markdown(
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  f"""
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+ # πŸš€ _De Novo_ Peptide Sequencing with InstaNovo and InstaNovo+
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  Upload your mass spectrometry data file (.mgf, .mzml, or .mzxml) and get peptide sequence predictions.
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  Choose your prediction method and decoding options.
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  * **Transformer Decoding Methods:**
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  * **Greedy Search:** use this for optimal performance, has similar performance as Knapsack Beam Search at 5% FDR.
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  * **Knapsack Beam Search:** use this for the best results and highest peptide recall, but is about 10x slower than Greedy Search.
 
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  * Check logs for progress, especially for large files or slower methods.
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+ This Hugging Face Space is powered by a [ZeroGPU ](https://huggingface.co/docs/hub/en/spaces-zerogpu), which is free but **limited to 5 minutes per day per user**β€”so if you test with your own files, please use only small files.
 
 
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  """,
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  elem_classes="feedback"
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  )
 
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  with gr.Accordion("Application Logs", open=True):
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  log_display = Log(log_file, dark=True, height=300)
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+
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+ gr.Markdown(""" **Links:**
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+ * [GitHub Repository for InstaNovo](https://github.com/instadeepai/instanovo)
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+ * [InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments](https://www.nature.com/articles/s42256-025-01019-5), Eloff, Kalogeropoulos et al. 2025, Nature Machine Intelligence.
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+
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+ If you use InstaNovo in your research, please cite:""")
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+
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  gr.Markdown(
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  value="""
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+ ```
 
 
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  @article{eloff_kalogeropoulos_2025_instanovo,
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  title = {InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments},
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  author = {Kevin Eloff and Konstantinos Kalogeropoulos and Amandla Mabona and Oliver Morell and Rachel Catzel and
 
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  doi = {10.1038/s42256-025-01019-5},
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  url = {https://www.nature.com/articles/s42256-025-01019-5}
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  }
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+ ```
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  """,
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+ show_copy_button=True
 
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  )
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  # --- Launch the App ---