enh: update the parquet file, add voxel num col

filter_data_app.py

@@ -26,14 +26,15 @@ def load_data(radiomics_feature='Volume from Voxel Summation'):
         'laterality_check',
         'series_with_vertabra_on_every_slice',
         'connected_volumes',
+        'voxel_num',
         radiomics_feature  # Include the selected radiomics feature column
     ]
     df = pl.read_parquet(LOCAL_PARQUET_FILE, columns=cols)
-    df = df.with_columns([
-        pl.when(pl.col('connected_volumes') == 'pass').then(pl.lit(1)).otherwise(
-            pl.col('connected_volumes').cast(pl.Int32, strict=False)
-        ).alias('connected_volumes')
-    ])
+    # df = df.with_columns([
+    #     pl.when(pl.col('connected_volumes') == 'pass').then(pl.lit(1)).otherwise(
+    #         pl.col('connected_volumes').cast(pl.Int32, strict=False)
+    #     ).alias('connected_volumes')
+    # ])
     
     return df
 
@@ -110,7 +111,8 @@ def main():
                     'series_with_vertabra_on_every_slice': None,
                     'connected_volumes': None,
                     'laterality': None,
-                    'radiomics_feature': 'Volume from Voxel Summation'  # Default radiomics feature
+                    'radiomics_feature': 'Volume from Voxel Summation',  # Default radiomics feature
+                    'voxel_nums': None
                 }
 
             filters = st.session_state.filters
@@ -124,6 +126,7 @@ def main():
                     'connected_volumes': None,
                     'laterality': None,
                     #'radiomics_feature': 'Volume from Voxel Summation' 
+                    'voxel_nums':None,
                 })
                 st.session_state.filters = filters
 
@@ -190,6 +193,8 @@ def main():
             series_with_vertabra_on_every_slice_options = [""] + filtered_df['series_with_vertabra_on_every_slice'].unique().to_list()
             connected_volumes_options = filtered_df['connected_volumes'].unique().to_list()
             laterality_options = [""] + filtered_df['laterality'].unique().to_list()
+            voxel_num_options = filtered_df.filter(col('voxel_num').is_not_null()).select('voxel_num').unique().to_pandas().iloc[:, 0].tolist()
+
             
             laterality = st.selectbox(
                 "Laterality",
@@ -232,6 +237,12 @@ def main():
                 on_change=lambda: apply_filter('connected_volumes', st.session_state.connected_volumes)
             )
 
+            voxel_nums = st.slider("Voxel Number",
+                                    min_value=min(voxel_num_options), 
+                                    max_value=max(voxel_num_options), 
+                                    key='voxel_num',  
+                                    on_change=lambda: apply_filter('voxel_nums', st.session_state.voxel_nums))
+
             st.session_state.filters = filters
             
             if laterality:
@@ -278,7 +289,7 @@ def main():
                               ),               
                                           
             },
-            column_order=("PatientID", "Viewer Url", "seriesNumber","bodyPart","laterality", "segmentation_completeness","laterality_check", "series_with_vertabra_on_every_slice","connected_volumes", radiomics_feature),  
+            column_order=("PatientID", "Viewer Url", "seriesNumber","bodyPart","laterality", "segmentation_completeness","laterality_check", "series_with_vertabra_on_every_slice","connected_volumes","voxel_num", radiomics_feature),  
             hide_index=True,
             use_container_width=True
         )
@@ -351,7 +362,7 @@ def main():
                     SUM(CASE WHEN segmentation_completeness = 'pass' THEN 1 ELSE 0 END) AS pass_count,
                     SUM(CASE WHEN laterality_check = 'pass' THEN 1 ELSE 0 END) AS laterality_pass_count,
                     SUM(CASE WHEN series_with_vertabra_on_every_slice = 'pass' THEN 1 ELSE 0 END) AS vertabra_pass_count,
-                    SUM(CASE WHEN connected_volumes = 'pass' THEN 1 ELSE 0 END) AS volumes_pass_count
+                    SUM(CASE WHEN connected_volumes = '1' THEN 1 ELSE 0 END) AS volumes_pass_count
                 FROM 
                     'qual-checks-and-quant-values.parquet'
                 GROUP BY 

qual-checks-and-quant-values.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:527bf1b978eec82de57e9b4f22d1470da418c47a45ee79c47a3af6857ee850e1
-size 1127681711
+oid sha256:9cdb5ac665c8bedf906f07ba1ba05232cf9ab2eb9045caec7fa1a3343222e9f2
+size 1157730459