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Update app.py
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app.py
CHANGED
@@ -868,7 +868,7 @@ with ui.navset_card_tab(id="tab"):
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here = Path(__file__).parent
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import matplotlib as mpl
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@output(suspend_when_hidden=True)
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@render.plot
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def plot():
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#ds = load_dataset('Hack90/virus_tiny')
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df = pd.read_parquet('virus_ds.parquet')
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@@ -893,6 +893,7 @@ with ui.navset_card_tab(id="tab"):
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filtered_df = df.groupby('Organism_Name').apply(filter_and_select).reset_index(drop=True)
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fig = plot_persistence_homology(filtered_df['Sequence'], filtered_df['Organism_Name'])
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return fig
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# with ui.nav_panel("Viral Model"):
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# gr.load("models/Hack90/virus_pythia_31_1024").launch()
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@@ -913,7 +914,7 @@ with ui.navset_card_tab(id="tab"):
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import matplotlib as mpl
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@output(suspend_when_hidden=True)
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@render.plot
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def plot():
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df = pd.read_csv('kmers.csv')
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k = input.kmer()
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@@ -939,7 +940,7 @@ with ui.navset_card_tab(id="tab"):
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ax.set_ylabel("Percentage")
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ax.set_xticklabels(df['kmer'], rotation=90)
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return fig
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-
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# with ui.nav_panel("Viral Model Training"):
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# ui.page_opts(fillable=True)
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# ui.panel_title("Does context size matter for a nucleotide model?")
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here = Path(__file__).parent
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import matplotlib as mpl
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@output(suspend_when_hidden=True)
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@render.plot(output_id="plot_macro_output")
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def plot():
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#ds = load_dataset('Hack90/virus_tiny')
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df = pd.read_parquet('virus_ds.parquet')
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filtered_df = df.groupby('Organism_Name').apply(filter_and_select).reset_index(drop=True)
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fig = plot_persistence_homology(filtered_df['Sequence'], filtered_df['Organism_Name'])
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return fig
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ui.output_plot("plot_macro_output")
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# with ui.nav_panel("Viral Model"):
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# gr.load("models/Hack90/virus_pythia_31_1024").launch()
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import matplotlib as mpl
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@output(suspend_when_hidden=True)
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@render.plot(output_id="plot_micro_output")
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def plot():
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df = pd.read_csv('kmers.csv')
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k = input.kmer()
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ax.set_ylabel("Percentage")
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ax.set_xticklabels(df['kmer'], rotation=90)
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return fig
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ui.output_plot("plot_micro_output")
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# with ui.nav_panel("Viral Model Training"):
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# ui.page_opts(fillable=True)
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# ui.panel_title("Does context size matter for a nucleotide model?")
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