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Update app.py
Browse files
app.py
CHANGED
@@ -8,7 +8,9 @@ ui.page_opts(fillable=True)
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ui.panel_title("Kmer Analysis")
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with ui.layout_columns():
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with ui.card():
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ui.input_slider("
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ui.input_selectize(
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"plot_type",
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"Select Metric:",
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@@ -20,11 +22,12 @@ with ui.layout_columns():
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@render.plot
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def plot():
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df = pd.read_csv('kmers.csv')
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k = input.
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fig = None
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if input.plot_type() == "count":
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df = df[df['k'] == k]
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df = df.head(
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fig, ax = plt.subplots()
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ax.bar(df['kmer'], df['count'])
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ax.set_title(f"Most common {k}-mers")
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@@ -33,7 +36,7 @@ def plot():
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ax.set_xticklabels(df['kmer'], rotation=90)
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if input.plot_type() == "percentage":
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df = df[df['k'] == k]
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df = df.head(
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fig, ax = plt.subplots()
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ax.bar(df['kmer'], df['percent']*100)
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ax.set_title(f"Most common {k}-mers")
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ui.panel_title("Kmer Analysis")
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with ui.layout_columns():
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with ui.card():
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ui.input_slider("kmer", "kmer", 0, 10, 5)
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ui.input_slider("top_k", "top n kmers", 0, 100, 15)
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ui.input_selectize(
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"plot_type",
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"Select Metric:",
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@render.plot
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def plot():
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df = pd.read_csv('kmers.csv')
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k = input.kmer()
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top_k = input.top_k()
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fig = None
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if input.plot_type() == "count":
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df = df[df['k'] == k]
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df = df.head(top_k)
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fig, ax = plt.subplots()
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ax.bar(df['kmer'], df['count'])
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ax.set_title(f"Most common {k}-mers")
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ax.set_xticklabels(df['kmer'], rotation=90)
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if input.plot_type() == "percentage":
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df = df[df['k'] == k]
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df = df.head(top_k)
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fig, ax = plt.subplots()
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ax.bar(df['kmer'], df['percent']*100)
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ax.set_title(f"Most common {k}-mers")
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