similarity_results.csv

Method,sparse_MF_correlation,sparse_CC_correlation,sparse_BP_correlation,sparse_Ave_correlation,200_MF_correlation,200_CC_correlation,200_BP_correlation,200_Ave_correlation,500_MF_correlation,500_CC_correlation,500_BP_correlation,500_Ave_correlation,sparse_MF_pvalue,sparse_BP_pvalue,sparse_CC_pvalue,sparse_Ave_pvalue,200_MF_pvalue,200_BP_pvalue,200_CC_pvalue,200_Ave_pvalue,500_MF_pvalue,500_BP_pvalue,500_CC_pvalue,500_Ave_pvalue
AAC,-0.0120530487301072,0.0912116785938685,0.2141018739428611,0.0977535012688741,,,,,,,,,,,,,,,,,,,,
APAAC,0.1716732195001037,0.240874262539882,0.2735843497262189,0.2287106105887349,,,,,,,,,,,,,,,,,,,,
LEARNED-VEC,0.4099830116701563,0.3051938408310146,0.2987112063885428,0.3379626862965713,,,,,,,,,,,,,,,,,,,,
PROTVEC,0.1854412229985308,0.2058335849333736,0.2952566916292122,0.2288438331870389,,,,,,,,,,,,,,,,,,,,
K-SEP,0.2222351644321201,0.2943533697632057,0.2924105791926405,0.2696663711293221,,,,,,,,,,,,,,,,,,,,
MUT2VEC,0.5462247913812742,0.3948878923766817,0.5799222876570942,0.50701165713835,,,,,,,,,,,,,,,,,,,,
GENE2VEC,0.1756222504801268,0.359607993537279,0.407953665862896,0.3143946366267673,,,,,,,,,,,,,,,,,,,,
XLNET,0.2270935836252544,0.2549405428464779,0.3090004241910071,0.2636781835542465,,,,,,,,,,,,,,,,,,,,
T5,0.5663605927245389,0.3984518032670328,0.2126939158889831,0.392502103960185,,,,,,,,,,,,,,,,,,,,
SEQVEC,0.4237953500744624,0.4242066438730631,0.2436484071644948,0.3638834670373401,,,,,,,,,,,,,,,,,,,,
TCGA-EMBEDDING,0.0375448135213401,0.5033396964743626,0.4822408636127631,0.3410417912028219,,,,,,,,,,,,,,,,,,,,
PFAM,0.3489483982233921,0.510730419386372,0.422215963284985,0.4272982602982497,,,,,,,,,,,,,,,,,,,,
CPC-PROT,0.0604542610865414,-0.0869798610000177,0.1090657842339456,0.0275133947734897,,,,,,,,,,,,,,,,,,,,
ESM1B,0.384697625027269,0.3731936223537567,0.4151856052080267,0.3910256175296842,,,,,,,,,,,,,,,,,,,,
BERT-BFD,0.2918631086847955,0.4157201514424359,0.3234845992693526,0.3436892864655279,,,,,,,,,,,,,,,,,,,,
BERT-PFAM,0.4964861293154893,0.2217707389039976,0.2068266617033433,0.3083611766409434,,,,,,,,,,,,,,,,,,,,
ALBERT,0.2218813721583892,0.3181002150766988,0.3690126305036619,0.3029980725795833,,,,,,,,,,,,,,,,,,,,
BLAST,0.1127460653100103,0.0884833522711429,0.3431671202767732,0.1814655126193088,,,,,,,,,,,,,,,,,,,,
HMMER,0.1373599246282869,0.3218542802568603,0.1577102930764373,0.2056414993205282,,,,,,,,,,,,,,,,,,,,
UNIREP,0.4213327475751828,0.3247590759614522,0.4695106024457135,0.4052008086607828,,,,,,,,,,,,,,,,,,,,
ESM2,0.2977856665086115,0.281050143088217,0.4273702754644458,0.3354020283537581,,,,,,,,,,,,,,,,,,,,
ESM3,0.5102468363444927,0.5762295810448107,0.4227236525442803,0.5030666899778612,,,,,,,,,,,,,,,,,,,,
SaProt,0.4031774477652035,0.3690662827280969,0.2418927575878248,0.3380454960270417,,,,,,,,,,,,,,,,,,,,
ProstT5,0.4474307637665665,0.4155957269059172,0.0806352476756064,0.3145539127826967,,,,,,,,,,,,,,,,,,,,
ProtHGT-TAPE-MF-sim,0.0676426208867526,0.2256642052045639,0.1130999435347261,0.1354689232086809,0.1046625870719076,0.0238279343234809,0.0698222676221539,0.0661042630058474,0.0562899711836086,0.0114963837042151,0.0325825354877617,0.0334562967918618,0.3081152026374549,0.0863172211631897,0.0006866785551513,0.131706367451932,7.887475622858088e-46,7.483266677192571e-21,0.0014920117291723,0.0004973372430574,2.3657666044607863e-79,2.7765463702827703e-27,0.0001444234657429,4.814115524765194e-05
ProtHGT-TAPE-BP-sim,0.44248598523078164,0.37672706338625617,0.2706400046729882,0.3632843510966753,0.2143909167941879,-0.0071818570350743105,0.14477442361042392,0.11732782778984584,0.2117889857352714,-0.0018704341207202455,0.07461927930453739,0.09484594363969619,2.1344083740495277e-12,3.0576812552093345e-05,6.2630970437801054e-09,1.0194359261181831e-05,1.2912840671594308e-189,1.0829837680869216e-84,0.33846193902746735,0.11282064634248912,0.0,7.553382437897129e-136,0.5363729565044189,0.17879098550147296