Spaces:
Running
Running
Update src/about.py
Browse files- src/about.py +5 -5
src/about.py
CHANGED
@@ -124,16 +124,16 @@ If you find PROBE useful, please consider citing our work:
|
|
124 |
Unsal, S., Atas, H., Albayrak, M., Turhan, K., Acar, A. C., & Doğan, T. (2022). Learning functional properties of proteins with language models. *Nature Machine Intelligence, 4*(3), 227-245.
|
125 |
"""
|
126 |
|
127 |
-
TASK_INFO = ["Semantic Similarity", "
|
128 |
similarity_tasks_options = ["Sparse Uniform", "Well Annotated 200", "Well Annotated 500"]
|
129 |
function_prediction_aspect_options = ["Molecular Function", "Biological Process", "Celular Components", "All Aspects"]
|
130 |
family_prediction_dataset_options = ["Not-clustered", "UniClust50", "UniClust30", "MM-seqs15"]
|
131 |
|
132 |
benchmark_type_map = {
|
133 |
-
"Semantic Similarity": "similarity",
|
134 |
-
"
|
135 |
-
"Target Protein Family
|
136 |
-
"Protein Protein Binding Affinity": "affinity",
|
137 |
}
|
138 |
|
139 |
similarity_tasks_map = {
|
|
|
124 |
Unsal, S., Atas, H., Albayrak, M., Turhan, K., Acar, A. C., & Doğan, T. (2022). Learning functional properties of proteins with language models. *Nature Machine Intelligence, 4*(3), 227-245.
|
125 |
"""
|
126 |
|
127 |
+
TASK_INFO = ["Semantic Similarity Inference", "Ontology-based Protein Function Prediction", "Drug Target Protein Family Classification", "Protein-Protein Binding Affinity Estimation"]
|
128 |
similarity_tasks_options = ["Sparse Uniform", "Well Annotated 200", "Well Annotated 500"]
|
129 |
function_prediction_aspect_options = ["Molecular Function", "Biological Process", "Celular Components", "All Aspects"]
|
130 |
family_prediction_dataset_options = ["Not-clustered", "UniClust50", "UniClust30", "MM-seqs15"]
|
131 |
|
132 |
benchmark_type_map = {
|
133 |
+
"Semantic Similarity Inference": "similarity",
|
134 |
+
"Ontology-based Function Prediction": "function",
|
135 |
+
"Drug Target Protein Family Classification": "family",
|
136 |
+
"Protein Protein Binding Affinity Estimation": "affinity",
|
137 |
}
|
138 |
|
139 |
similarity_tasks_map = {
|