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gyigit commited on Sep 30, 2024

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35b9102

1 Parent(s): 0c0fd5b

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.gitattributes +5 -0
src/data/auxilary_input/GO_datasets/BP_High_Normal.tsv +3289 -0
src/data/auxilary_input/GO_datasets/BP_High_Shallow.tsv +3387 -0
src/data/auxilary_input/GO_datasets/BP_High_Specific.tsv +2026 -0
src/data/auxilary_input/GO_datasets/BP_Low_Normal.tsv +29 -0
src/data/auxilary_input/GO_datasets/BP_Low_Shallow.tsv +28 -0
src/data/auxilary_input/GO_datasets/BP_Low_Specific.tsv +43 -0
src/data/auxilary_input/GO_datasets/BP_Middle_Normal.tsv +453 -0
src/data/auxilary_input/GO_datasets/BP_Middle_Shallow.tsv +897 -0
src/data/auxilary_input/GO_datasets/BP_Middle_Specific.tsv +624 -0
src/data/auxilary_input/GO_datasets/CC_High_Normal.tsv +0 -0
src/data/auxilary_input/GO_datasets/CC_High_Shallow.tsv +0 -0
src/data/auxilary_input/GO_datasets/CC_Low_Normal.tsv +48 -0
src/data/auxilary_input/GO_datasets/CC_Low_Shallow.tsv +56 -0
src/data/auxilary_input/GO_datasets/CC_Low_Specific.tsv +55 -0
src/data/auxilary_input/GO_datasets/CC_Middle_Normal.tsv +563 -0
src/data/auxilary_input/GO_datasets/CC_Middle_Shallow.tsv +414 -0
src/data/auxilary_input/GO_datasets/CC_Middle_Specific.tsv +414 -0
src/data/auxilary_input/GO_datasets/MF_High_Normal.tsv +1325 -0
src/data/auxilary_input/GO_datasets/MF_High_Shallow.tsv +3040 -0
src/data/auxilary_input/GO_datasets/MF_Low_Normal.tsv +32 -0
src/data/auxilary_input/GO_datasets/MF_Low_Shallow.tsv +42 -0
src/data/auxilary_input/GO_datasets/MF_Low_Specific.tsv +42 -0
src/data/auxilary_input/GO_datasets/MF_Middle_Normal.tsv +370 -0
src/data/auxilary_input/GO_datasets/MF_Middle_Shallow.tsv +614 -0
src/data/auxilary_input/GO_datasets/MF_Middle_Specific.tsv +205 -0
src/data/auxilary_input/SparsifiedSimilarites_for_highest_500.npy +3 -0
src/data/auxilary_input/SparsifiedSimilarityCoordinates_BP_for_highest_500.npy +3 -0
src/data/auxilary_input/SparsifiedSimilarityCoordinates_CC_for_highest_500.npy +3 -0
src/data/auxilary_input/SparsifiedSimilarityCoordinates_MF_for_highest_500.npy +3 -0
src/data/auxilary_input/SparsifiedSimilarityCoordinates_for_highest_500.npy +3 -0
src/data/auxilary_input/entry_class.csv +3 -0
src/data/auxilary_input/skempi_pipr/SKEMPI_all_dg_avg.txt +0 -0
src/data/auxilary_input/skempi_pipr/SKEMPI_seq.txt +0 -0
src/data/leaderboard_result.csv +3 -1
src/data/preprocess/.DS_Store +0 -0
src/data/preprocess/entry_class_nn.csv +3 -0
src/data/preprocess/human_BP_proteinSimilarityMatrix.csv +3 -0
src/data/preprocess/human_BP_proteinSimilarityMatrix_for_highest_annotated_200_proteins.csv +3 -0
src/data/preprocess/human_BP_proteinSimilarityMatrix_for_highest_annotated_500_proteins.csv +3 -0
src/data/preprocess/human_CC_proteinSimilarityMatrix.csv +3 -0
src/data/preprocess/human_CC_proteinSimilarityMatrix_for_highest_annotated_200_proteins.csv +3 -0
src/data/preprocess/human_CC_proteinSimilarityMatrix_for_highest_annotated_500_proteins.csv +3 -0
src/data/preprocess/human_MF_proteinSimilarityMatrix.csv +3 -0
src/data/preprocess/human_MF_proteinSimilarityMatrix_for_highest_annotated_200_proteins.csv +3 -0
src/data/preprocess/human_MF_proteinSimilarityMatrix_for_highest_annotated_500_proteins.csv +3 -0
src/data/preprocess/indexes/mm15_trainindex.csv +3 -0
src/data/preprocess/indexes/nc_trainindex.csv +3 -0
src/data/preprocess/indexes/testindex_family.csv +3 -0
src/data/preprocess/indexes/uc15_trainindex.csv +3 -0

.gitattributes CHANGED Viewed

@@ -33,3 +33,8 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text

 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+src/data/auxilary_input filter=lfs diff=lfs merge=lfs -text
+*.csv filter=lfs diff=lfs merge=lfs -text
+src/data/preprocess/human_BP_proteinSimilarityMatrix.csv filter=lfs diff=lfs merge=lfs -text
+src/data/preprocess/human_CC_proteinSimilarityMatrix.csv filter=lfs diff=lfs merge=lfs -text
+src/data/preprocess/human_MF_proteinSimilarityMatrix.csv filter=lfs diff=lfs merge=lfs -text

src/data/auxilary_input/GO_datasets/BP_High_Normal.tsv ADDED Viewed

	@@ -0,0 +1,3289 @@

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src/data/auxilary_input/GO_datasets/BP_High_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,3387 @@

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src/data/auxilary_input/GO_datasets/BP_High_Specific.tsv ADDED Viewed

	@@ -0,0 +1,2026 @@

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src/data/auxilary_input/GO_datasets/BP_Low_Normal.tsv ADDED Viewed

	@@ -0,0 +1,29 @@

+Protein_Id	GO:0050482	GO:0098703	GO:0061740	GO:0014808	GO:0000056
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src/data/auxilary_input/GO_datasets/BP_Low_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,28 @@

+Protein_Id	GO:0032933	GO:0042989	GO:0039529	GO:0000054	GO:0006348
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src/data/auxilary_input/GO_datasets/BP_Low_Specific.tsv ADDED Viewed

	@@ -0,0 +1,43 @@

+Protein_Id	GO:0034625	GO:0046323	GO:0006231	GO:0043984	GO:0072539
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src/data/auxilary_input/GO_datasets/BP_Middle_Normal.tsv ADDED Viewed

	@@ -0,0 +1,453 @@

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src/data/auxilary_input/GO_datasets/BP_Middle_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,897 @@

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src/data/auxilary_input/GO_datasets/BP_Middle_Specific.tsv ADDED Viewed

	@@ -0,0 +1,624 @@

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src/data/auxilary_input/GO_datasets/CC_High_Normal.tsv ADDED Viewed

The diff for this file is too large to render. See raw diff

src/data/auxilary_input/GO_datasets/CC_High_Shallow.tsv ADDED Viewed

The diff for this file is too large to render. See raw diff

src/data/auxilary_input/GO_datasets/CC_Low_Normal.tsv ADDED Viewed

	@@ -0,0 +1,48 @@

+Protein_Id	GO:0031089	GO:0070081	GO:1990454	GO:0036020	GO:0044754
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src/data/auxilary_input/GO_datasets/CC_Low_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,56 @@

+Protein_Id	GO:0097165	GO:0008024	GO:0000124	GO:0033162	GO:0032590
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src/data/auxilary_input/GO_datasets/CC_Low_Specific.tsv ADDED Viewed

	@@ -0,0 +1,55 @@

+Protein_Id	GO:0019908	GO:0005736	GO:0005767	GO:0032009	GO:0099061
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src/data/auxilary_input/GO_datasets/CC_Middle_Normal.tsv ADDED Viewed

	@@ -0,0 +1,563 @@

+Protein_Id	GO:0022627	GO:0000502	GO:0034705	GO:0030665	GO:0005925
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src/data/auxilary_input/GO_datasets/CC_Middle_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,414 @@

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src/data/auxilary_input/GO_datasets/CC_Middle_Specific.tsv ADDED Viewed

	@@ -0,0 +1,414 @@

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src/data/auxilary_input/GO_datasets/MF_High_Normal.tsv ADDED Viewed

	@@ -0,0 +1,1325 @@

+Protein_Id	GO:0044212	GO:0016462
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src/data/auxilary_input/GO_datasets/MF_High_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,3040 @@

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src/data/auxilary_input/GO_datasets/MF_Low_Normal.tsv ADDED Viewed

	@@ -0,0 +1,32 @@

+Protein_Id	GO:0016934	GO:0022848	GO:0005335	GO:0005314	GO:0003689
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src/data/auxilary_input/GO_datasets/MF_Low_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,42 @@

+Protein_Id	GO:0015187	GO:0043138	GO:0008568	GO:0008508	GO:0005328
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src/data/auxilary_input/GO_datasets/MF_Low_Specific.tsv ADDED Viewed

	@@ -0,0 +1,42 @@

+Protein_Id	GO:0004571	GO:0008511	GO:0004957	GO:0097199	GO:0017049
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src/data/auxilary_input/GO_datasets/MF_Middle_Normal.tsv ADDED Viewed

	@@ -0,0 +1,370 @@

+Protein_Id	GO:0004843	GO:0004714	GO:0003774	GO:0008227	GO:0004866
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src/data/auxilary_input/GO_datasets/MF_Middle_Shallow.tsv ADDED Viewed

	@@ -0,0 +1,614 @@

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src/data/auxilary_input/GO_datasets/MF_Middle_Specific.tsv ADDED Viewed

	@@ -0,0 +1,205 @@

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