Erva Ulusoy commited on
Commit
7033bad
·
1 Parent(s): 726f57d

sort domain locations 3rd try

Browse files
Files changed (1) hide show
  1. run_domain2go_app.py +2 -2
run_domain2go_app.py CHANGED
@@ -53,7 +53,7 @@ def find_domains(email, sequence, name):
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  for elem in json_output['matches']:
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  entry = elem['signature']['entry']
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- location_list = [(i['start'],i['end']) for i in elem['locations']]
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  if type(entry) == dict and entry['type'] == 'DOMAIN':
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  if entry['accession'] not in entries:
@@ -72,7 +72,7 @@ def find_domains(email, sequence, name):
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  entries[entry['accession']]['locations'].extend(location_list)
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  entries[entry['accession']]['locations'] = list(set(entries[entry['accession']]['locations']))
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- # entries[entry['accession']]['locations'] = sorted(entries[entry['accession']]['locations'], key=lambda x: x[0])
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  entries[entry['accession']]['locations'] = [f'{i[0]}-{i[1]}' for i in entries[entry['accession']]['locations']]
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  entries[entry['accession']]['locations'] = ';'.join(entries[entry['accession']]['locations'])
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  for elem in json_output['matches']:
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  entry = elem['signature']['entry']
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+ location_list = [(int(i['start']), int(i['end'])) for i in elem['locations']]
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  if type(entry) == dict and entry['type'] == 'DOMAIN':
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  if entry['accession'] not in entries:
 
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  entries[entry['accession']]['locations'].extend(location_list)
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  entries[entry['accession']]['locations'] = list(set(entries[entry['accession']]['locations']))
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+ entries[entry['accession']]['locations'] = sorted(entries[entry['accession']]['locations'], key=lambda x: x[0])
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  entries[entry['accession']]['locations'] = [f'{i[0]}-{i[1]}' for i in entries[entry['accession']]['locations']]
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  entries[entry['accession']]['locations'] = ';'.join(entries[entry['accession']]['locations'])
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