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Update app.py
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app.py
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@@ -47,85 +47,6 @@ if "processed_chunks" not in st.session_state:
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if "vector_store" not in st.session_state:
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st.session_state.vector_store = None
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# ----------------- Text Cleaning Functions -----------------
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def clean_extracted_text(text):
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"""
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Cleans extracted PDF text by removing excessive line breaks, fixing spacing issues, and resolving OCR artifacts.
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"""
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text = re.sub(r'\n+', '\n', text) # Remove excessive newlines
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text = re.sub(r'\s{2,}', ' ', text) # Remove extra spaces
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text = re.sub(r'(\w)-\n(\w)', r'\1\2', text) # Fix hyphenated words split by a newline
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return text.strip()
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def extract_title_manually(text):
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"""
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Attempts to find the title by checking the first few lines.
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- Titles are usually long enough (more than 5 words).
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- Ignores common header text like "Abstract", "Introduction".
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"""
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lines = text.split("\n")
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ignore_keywords = ["abstract", "introduction", "keywords", "contents", "table", "figure"]
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for line in lines[:5]: # Check only the first 5 lines
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clean_line = line.strip()
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if len(clean_line.split()) > 5 and not any(word.lower() in clean_line.lower() for word in ignore_keywords):
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return clean_line # Return first valid title
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return "Unknown"
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# ----------------- Metadata Extraction -----------------
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def extract_metadata_llm(pdf_path):
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"""Extracts metadata using LLM for better accuracy."""
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with pdfplumber.open(pdf_path) as pdf:
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if not pdf.pages:
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return {"Title": "Unknown", "Author": "Unknown", "Emails": "No emails found", "Affiliations": "No affiliations found"}
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# Extract text from the first page
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first_page_text = pdf.pages[0].extract_text()
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if not first_page_text:
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return {"Title": "Unknown", "Author": "Unknown", "Emails": "No emails found", "Affiliations": "No affiliations found"}
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cleaned_text = first_page_text.strip()
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# Define a structured prompt for the LLM
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metadata_prompt = PromptTemplate(
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input_variables=["text"],
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template="""
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Extract the following metadata from the research paper's first page:
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- Title
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- Authors (comma-separated)
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- Emails (comma-separated)
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- Affiliations
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Ensure the output is in **valid JSON format** with keys: "Title", "Author", "Emails", "Affiliations".
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Here is the text:
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{text}
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Provide the JSON output only, no extra text.
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"""
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)
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# Run the LLM Metadata Extraction
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metadata_chain = LLMChain(llm=llm_judge, prompt=metadata_prompt, output_key="metadata")
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try:
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metadata_response = metadata_chain.invoke({"text": cleaned_text})
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# Convert the LLM response into a dictionary
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metadata_dict = json.loads(metadata_response["metadata"])
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except Exception as e:
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metadata_dict = {
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"Title": "Unknown",
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"Author": "Unknown",
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"Emails": "No emails found",
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"Affiliations": "No affiliations found"
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}
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return metadata_dict
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# ----------------- Step 1: Choose PDF Source -----------------
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pdf_source = st.radio("Upload or provide a link to a PDF:", ["Upload a PDF file", "Enter a PDF URL"], index=0, horizontal=True)
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@@ -164,34 +85,16 @@ if not st.session_state.pdf_loaded and "pdf_path" in st.session_state:
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with st.spinner("π Processing document... Please wait."):
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loader = PDFPlumberLoader(st.session_state.pdf_path)
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docs = loader.load()
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st.json(docs[0].metadata)
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# Extract metadata
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metadata = extract_metadata_llm(st.session_state.pdf_path)
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# Display extracted-metadata
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if isinstance(metadata, dict):
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st.subheader("π Extracted Document Metadata")
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st.write(f"**Title:** {metadata.get('Title', 'Unknown')}")
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st.write(f"**Author:** {metadata.get('Author', 'Unknown')}")
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st.write(f"**Emails:** {metadata.get('Emails', 'No emails found')}")
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st.write(f"**Affiliations:** {metadata.get('Affiliations', 'No affiliations found')}")
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else:
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st.error("Metadata extraction failed.")
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# Embedding Model
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model_name = "nomic-ai/modernbert-embed-base"
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embedding_model = HuggingFaceEmbeddings(model_name=model_name, model_kwargs={"device": "cpu"}, encode_kwargs={'normalize_embeddings': False})
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# Convert metadata into a retrievable chunk
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metadata_doc = {"page_content": metadata, "metadata": {"source": "metadata"}}
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# Prevent unnecessary re-chunking
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if not st.session_state.chunked:
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text_splitter = SemanticChunker(embedding_model)
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document_chunks = text_splitter.split_documents(docs)
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document_chunks.insert(0, metadata_doc) # Insert metadata as a retrievable document
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st.session_state.processed_chunks = document_chunks
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st.session_state.chunked = True
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if "vector_store" not in st.session_state:
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st.session_state.vector_store = None
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# ----------------- Step 1: Choose PDF Source -----------------
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pdf_source = st.radio("Upload or provide a link to a PDF:", ["Upload a PDF file", "Enter a PDF URL"], index=0, horizontal=True)
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with st.spinner("π Processing document... Please wait."):
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loader = PDFPlumberLoader(st.session_state.pdf_path)
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docs = loader.load()
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# Embedding Model
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model_name = "nomic-ai/modernbert-embed-base"
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embedding_model = HuggingFaceEmbeddings(model_name=model_name, model_kwargs={"device": "cpu"}, encode_kwargs={'normalize_embeddings': False})
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# Prevent unnecessary re-chunking
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if not st.session_state.chunked:
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text_splitter = SemanticChunker(embedding_model)
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document_chunks = text_splitter.split_documents(docs)
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st.session_state.processed_chunks = document_chunks
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st.session_state.chunked = True
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