app.py

import streamlit as st
import numpy as np
import matplotlib.pyplot as plt
import random
from scipy.stats import entropy as scipy_entropy
import time

st.set_page_config(layout="wide")

# --- ПАРАМЕТРЫ ---
seqlen = 60
min_run, max_run = 1, 2
ANGLE_MAP = {'A': 60.0, 'C': 180.0, 'G': -60.0, 'T': -180.0, 'N': 0.0}
bases = ['A', 'C', 'G', 'T']

# --- ФУНКЦИИ ---
def find_local_min_runs(profile, min_run=1, max_run=2):
    result = []
    N = len(profile)
    i = 0
    while i < N:
        run_val = profile[i]
        run_length = 1
        while i + run_length < N and profile[i + run_length] == run_val:
            run_length += 1
        if min_run <= run_length <= max_run:
            result.append((i, i + run_length - 1, run_val))
        i += run_length
    return result

def bio_mutate(seq):
    r = random.random()
    mutation_type = "None"
    if r < 0.70:
        idx = random.randint(0, len(seq)-1)
        orig = seq[idx]
        prob = random.random()
        if orig in 'AG':
            newbase = 'C' if prob < 0.65 else random.choice(['T', 'C'])
        elif orig in 'CT':
            newbase = 'G' if prob < 0.65 else random.choice(['A', 'G'])
        else:
            newbase = random.choice([b for b in bases if b != orig])
        seq = seq[:idx] + newbase + seq[idx+1:]
        mutation_type = f"Substitution at {idx}: {orig} → {newbase}"
    elif r < 0.80:
        idx = random.randint(0, len(seq)-1)
        ins = ''.join(random.choices(bases, k=random.randint(1, 3)))
        seq = seq[:idx] + ins + seq[idx:]
        if len(seq) > seqlen:
            seq = seq[:seqlen]
        mutation_type = f"Insertion at {idx}: {ins}"
    elif r < 0.90:
        if len(seq) > 4:
            idx = random.randint(0, len(seq)-2)
            dell = random.randint(1, min(3, len(seq)-idx))
            deleted = seq[idx:idx+dell]
            seq = seq[:idx] + seq[idx+dell:]
            mutation_type = f"Deletion at {idx}: {deleted}"
    else:
        if len(seq) > 10:
            start = random.randint(0, len(seq)-6)
            end = start + random.randint(3,6)
            subseq = seq[start:end]
            seq = seq[:start] + subseq[::-1] + seq[end:]
            mutation_type = f"Inversion from {start} to {end}: {subseq} → {subseq[::-1]}"
    while len(seq) < seqlen:
        seq += random.choice(bases)
    return seq[:seqlen], mutation_type

def compute_autocorr(profile):
    profile = profile - np.mean(profile)
    result = np.correlate(profile, profile, mode='full')
    result = result[result.size // 2:]
    norm = np.max(result) if np.max(result) != 0 else 1
    return result[:10]/norm

def compute_entropy(profile):
    vals, counts = np.unique(profile, return_counts=True)
    p = counts / counts.sum()
    return scipy_entropy(p, base=2)

# --- UI ---
st.title("🔴 Живой эфир мутаций ДНК")
start = st.button("▶️ Старт эфира")
stop = st.checkbox("⏹️ Остановить")

plot_placeholder = st.empty()
status_placeholder = st.sidebar.empty()
entropy_placeholder = st.sidebar.empty()
mutation_type_placeholder = st.sidebar.empty()

if start:
    seq = ''.join(random.choices(bases, k=seqlen))
    stat_bist_counts = []
    stat_entropy = []

    step = 0
    while True:
        if stop:
            st.warning("⏹️ Эфир остановлен пользователем.")
            break

        if step != 0:
            seq, mut_type = bio_mutate(seq)
        else:
            mut_type = "Initial sequence"

        torsion_profile = np.array([ANGLE_MAP.get(nt, 0.0) for nt in seq])
        runs = find_local_min_runs(torsion_profile, min_run, max_run)
        stat_bist_counts.append(len(runs))
        ent = compute_entropy(torsion_profile)
        stat_entropy.append(ent)
        acorr = compute_autocorr(torsion_profile)

        fig, axs = plt.subplots(3, 1, figsize=(10, 8))
        plt.subplots_adjust(hspace=0.45)

        axs[0].plot(torsion_profile, color='royalblue')
        for start_, end_, val in runs:
            axs[0].axvspan(start_, end_, color="red", alpha=0.3)
        axs[0].set_ylim(-200, 200)
        axs[0].set_title(f"Шаг {step}: {seq}")
        axs[0].set_ylabel("Торсионный угол")

        axs[1].plot(stat_bist_counts, '-o', color='crimson', markersize=4)
        axs[1].set_ylabel("Биомашины")
        axs[1].set_title("Количество машин")

        axs[2].bar(np.arange(6), acorr[:6], color='teal')
        axs[2].set_title(f"Автокорреляция / Энтропия: {ent:.2f}")
        axs[2].set_xlabel("Лаг")

        plot_placeholder.pyplot(fig)
        plt.close(fig)

        status_placeholder.markdown(f"### ℹ️ Шаг: {step}")
        entropy_placeholder.metric("Энтропия", f"{ent:.2f}")
        mutation_type_placeholder.markdown(f"**Мутация:** {mut_type}")

        step += 1
        time.sleep(0.3)