
We have deposited the raw mass spectrometry proteome data and search results to the ProteomeXchange Consortium (http:// proteomecentral.proteomexchange.org) via the Proteomics Identifications Database (PRIDE) partner repository with the dataset identifier PXD008307. In addition, we now supply Supplementary Data 4 to describe our sampling and labelling strategies, and to list all identified proteins and their differential expression in leukaemia stem cells (LSCs) compared to non-LSCs. In Extended Data Fig. 1a of this Letter, the flow cytometry plot depicting the surface phenotype of acute myeloid leukaemia (AML) sample DD08 was a duplicate of the plot for AML sample DD06. Extended Data Fig. 1 

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