Update requirements.txt

requirements.txt

@@ -1,236 +1,22 @@
-pydantic==2.9.0
-absl-py==2.1.0
-aiofiles==23.2.1
-aiohappyeyeballs==2.4.0
-aiohttp==3.10.5
-aiosignal==1.3.1
-albucore==0.0.11
-albumentations==1.1.0
-annotated-types==0.7.0
-antlr4-python3-runtime==4.9.3
-async-timeout==4.0.3
-backcall==0.2.0
-backoff==2.2.1
-blinker==1.8.2
-cachetools==5.5.0
-cairocffi==1.7.1
-CairoSVG==2.7.1
-chardet==5.2.0
-chemrxnextractor @ git+https://github.com/CrystalEye42/ChemRxnExtractor.git@0f9529dbe3656e4ef5ea96c5b5ba990f7481700b
-ci-info==0.3.0
-click==8.1.7
-cmake==4.0.0
-coloredlogs==15.0.1
-ConfigArgParse==1.7
-configobj==5.0.8
-configparser==7.1.0
-contourpy==1.3.0
-cryptography==43.0.1
-cssselect2==0.7.0
-cycler==0.12.1
-dataclasses-json==0.6.7
-deepdiff==8.0.1
-Deprecated==1.2.14
-dirtyjson==1.0.8
-distro==1.9.0
-easyocr==1.7.1
-effdet==0.2.1
-einops==0.8.1
-emoji==2.12.1
-et-xmlfile==1.1.0
-etelemetry==0.3.1
-eval_type_backport==0.2.0
-fastprogress==1.0.3
-ffmpy==0.4.0
-filetype==1.2.0
-fitz==0.0.1.dev2
-Flask==3.0.3
-flatbuffers==24.3.25
-fonttools==4.53.1
-frontend==0.0.3
-frozenlist==1.4.1
-fsspec==2024.9.0
-GeneralAgent==0.3.25
-gensim==4.3.3
-gmpy2
-google-api-core==2.19.2
-google-auth==2.34.0
-google-cloud-vision==3.7.4
-googleapis-common-protos==1.65.0
-gptpdf==0.0.15
-gradio==5.5.0
-gradio_client==1.4.2
-greenlet==3.1.0
-grpcio==1.66.1
-grpcio-status==1.66.1
-httplib2==0.22.0
-huggingface-hub==0.30.2
-humanfriendly==10.0
-imageio==2.35.1
-iopath==0.1.10
-ipython==8.12.2
-isodate==0.6.1
-itsdangerous==2.2.0
-jiter==0.5.0
-joblib==1.4.2
-jsonpatch==1.33
-jsonpath-python==1.0.6
-jsonpointer==3.0.0
-kiwisolver==1.4.7
-langchain==0.3.0
-langchain-community==0.3.0
-langchain-core==0.3.0
-langchain-text-splitters==0.3.0
-langdetect==1.0.9
-langsmith==0.1.121
-layoutparser==0.3.4
-lazy_loader==0.4
-lightning-utilities==0.11.7
-lit==18.1.8
-llama-cloud==0.0.17
-llama-index==0.11.10
-llama-index-agent-openai==0.3.1
-llama-index-cli==0.3.1
-llama-index-core==0.11.10
-llama-index-embeddings-openai==0.2.5
-llama-index-indices-managed-llama-cloud==0.3.1
-llama-index-legacy==0.9.48.post3
-llama-index-llms-openai==0.2.7
-llama-index-multi-modal-llms-openai==0.2.1
-llama-index-program-openai==0.2.0
-llama-index-question-gen-openai==0.2.0
-llama-index-readers-file==0.2.1
-llama-index-readers-llama-parse==0.3.0
-llama-parse==0.5.5
-looseversion==1.3.0
-lxml==5.3.0
-Markdown==3.7
-markdown-it-py==3.0.0
-marshmallow==3.22.0
-matplotlib==3.9.2
-mdurl==0.1.2
-mkl-service==2.4.0
-multidict==6.0.5
-mypy-extensions==1.0.0
-networkx==3.3
-nibabel==5.2.1
-ninja==1.11.1.1
-nipype==1.8.6
-nltk==3.9.1
+pydantic==2.10.6
 numpy==1.26.4
-olefile==0.47
-omegaconf==2.3.0
-onnx==1.16.2
-onnxruntime==1.19.2
-openai==1.44.1
+torch==2.2.0
+transformers==4.47.0
+layoutparser[effdet]
 opencv-python==4.5.5.64
-opencv-python-headless==4.10.0.84
-OpenNMT-py==2.2.0
-openpyxl==3.1.5
-orderly-set==5.2.2
-orjson==3.10.7
-pandas==2.2.2
-pathlib==1.0.1
-pdf2image==1.17.0
-pdfminer.six==20231228
-pdfplumber==0.11.4
-pdftotext==2.2.2
-pi_heif==0.18.0
-pikepdf==9.2.1
-pillow==10.4.0
-portalocker==2.10.1
-proto-plus==1.24.0
-protobuf==5.28.0
-prov==2.0.1
-PubChemPy==1.0.4
-pyasn1==0.6.1
-pyasn1_modules==0.4.1
-pyclipper==1.3.0.post5
-pycocotools==2.0.8
-pycparser
-pydantic==2.9.0
-pydantic-settings==2.5.2
-pydantic_core==2.23.2
-pydot==3.0.1
-pydub==0.25.1
-PyMuPDF==1.25.5
-pymupdf4llm==0.0.21
-PyMuPDFb==1.24.10
-pyonmttok==1.37.1
-pypandoc==1.13
-pyparsing==3.1.4
-pypdf==4.3.1
-PyPDF2==3.0.1
-pypdfium2==4.30.0
-python-bidi==0.6.0
-python-docx==1.1.2
-python-dotenv==1.0.1
-python-iso639==2024.4.27
-python-magic==0.4.27
-python-multipart==0.0.12
-python-oxmsg==0.0.1
-pyxnat==1.6.2
-qudida==0.0.4
-rapidfuzz==3.9.7
-rdflib==6.3.2
-rdkit==2024.3.5
-rdkit-pypi==2022.9.5
-regex==2024.7.24
-requests-toolbelt==1.0.0
-rich==13.9.4
-rsa==4.9
-ruff==0.7.3
-safehttpx==0.1.1
-safetensors==0.4.5
-scikit-image==0.24.0
-scikit-learn==1.5.1
-scipy==1.13.1
-semantic-version==2.10.0
-sentencepiece==0.2.0
-seqeval==1.2.2
-shapely==2.0.6
-shellingham==1.5.4
-simplejson==3.19.3
-smart-open==7.0.4
+opencv-python-headless==4.5.4.60
+Pillow==9.5.0
+ipython
+openai
+albumentations==1.1.0
+matplotlib>=3.5.3
 SmilesPE==0.0.3
-SQLAlchemy==2.0.34
-starlette==0.41.2
-striprtf==0.0.26
-sympy==1.13.2
-tabulate==0.9.0
-tenacity==8.5.0
-tensorboard==2.17.1
-tensorboard-data-server==0.7.2
-tesseract==0.1.3
-threadpoolctl==3.5.0
-tifffile==2024.8.30
-tiktoken==0.7.0
+OpenNMT-py==2.2.0
+rdkit-pypi>=2021.03.2
 timm==0.4.12
-tinydb==4.8.0
-tokenizers==0.21.1
-tomlkit==0.12.0
-torch==2.2.0
-torchaudio
-torchtext
-torchvision
-tqdm==4.66.5
-traits==6.3.2
-transformers==4.47.0
-triton==2.2.0
-typer==0.13.0
-typing-inspect==0.9.0
-tzdata==2024.1
-unstructured==0.15.12
-unstructured-client==0.25.8
-unstructured-inference==0.7.36
-unstructured.pytesseract==0.3.13
-uvicorn==0.30.6
-valgrind==0.0.0
-waitress==3.0.0
-webencodings==0.5.1
-websockets==12.0
-Werkzeug==3.0.4
-wrapt==1.16.0
-xlrd==2.0.1
-XlsxWriter==3.2.0
-yarl==1.10.0
+pandas>=1.2.4
+pycocotools>=2.0.4
+pytorch-lightning>=1.8.6
+huggingface-hub>=0.11.0
+easyocr>=1.6.2
+cairosvg