medical_chatbot.py

# Setup and Installation

import torch
print("🖥️ System Check:")
print(f"CUDA available: {torch.cuda.is_available()}")
if torch.cuda.is_available():
    print(f"GPU device: {torch.cuda.get_device_name(0)}")
    print(f"GPU memory: {torch.cuda.get_device_properties(0).total_memory / 1e9:.1f} GB")
else:
    print("⚠️ No GPU detected - BioGPT will run on CPU")

print("\n🔧 Loading required packages...")

# Import Libraries

import os
import re
import torch
import warnings
import numpy as np
import faiss  # FAISS for vector search
from transformers import (
    AutoTokenizer,
    AutoModelForCausalLM,
    pipeline,
    BitsAndBytesConfig
)
from sentence_transformers import SentenceTransformer
from typing import List, Dict, Optional
import time
from datetime import datetime
import json
import pickle

# Suppress warnings for cleaner output
warnings.filterwarnings('ignore')

print("📚 Libraries imported successfully!")
print(f"🔍 FAISS version: {faiss.__version__}")
print("🎯 Using FAISS for vector search")

# BioGPT Medical Chatbot Class

class ColabBioGPTChatbot:
    def __init__(self, use_gpu=True, use_8bit=True):
        """Initialize BioGPT chatbot optimized for deployment"""
        print("🏥 Initializing Professional BioGPT Medical Chatbot...")

        # Force CPU for HF Spaces if needed
        self.device = "cuda" if torch.cuda.is_available() and use_gpu else "cpu"
        self.use_8bit = use_8bit and torch.cuda.is_available()

        print(f"🖥️ Using device: {self.device}")
        if self.use_8bit:
            print("💾 Using 8-bit quantization for memory efficiency")

        # Setup components
        self.setup_embeddings()
        self.setup_faiss_index()
        self.setup_biogpt()

        # Conversation tracking
        self.conversation_history = []
        self.knowledge_chunks = []

        print("✅ BioGPT Medical Chatbot ready for professional medical assistance!")

    def setup_embeddings(self):
        """Setup medical-optimized embeddings"""
        print("🔧 Loading medical embeddings...")
        try:
            # Use a smaller, more efficient model for deployment
            self.embedding_model = SentenceTransformer('all-MiniLM-L6-v2')
            self.embedding_dim = self.embedding_model.get_sentence_embedding_dimension()
            print(f"✅ Embeddings loaded (dimension: {self.embedding_dim})")
            self.use_embeddings = True
        except Exception as e:
            print(f"⚠️ Embeddings failed: {e}")
            self.embedding_model = None
            self.embedding_dim = 384
            self.use_embeddings = False

    def setup_faiss_index(self):
        """Setup faiss for CPU-based vector search"""
        print("🔧 Setting up FAISS vector database...")
        try:
            print('Using CPU FAISS index for maximum compatibility')
            self.faiss_index = faiss.IndexFlatIP(self.embedding_dim)
            self.use_gpu_faiss = False
            self.faiss_ready = True
            self.collection = self.faiss_index
            print("✅ FAISS CPU index initialized successfully")
        except Exception as e:
            print(f"❌ FAISS setup failed: {e}")
            self.faiss_index = None
            self.faiss_ready = False
            self.collection = None

    def setup_biogpt(self):
        """Setup BioGPT model with optimizations for deployment"""
        print("🧠 Loading BioGPT model...")

        # Try BioGPT first, fallback to smaller models if needed
        model_options = [
            "microsoft/BioGPT-Large",
            "microsoft/BioGPT",  # Smaller version
            "microsoft/DialoGPT-medium",  # Fallback
            "gpt2"  # Final fallback
        ]

        for model_name in model_options:
            try:
                print(f"   Attempting to load: {model_name}")
                
                # Setup quantization config for memory efficiency
                if self.use_8bit and "BioGPT" in model_name:
                    quantization_config = BitsAndBytesConfig(
                        load_in_8bit=True,
                        llm_int8_threshold=6.0,
                        llm_int8_has_fp16_weight=False,
                    )
                else:
                    quantization_config = None

                # Load tokenizer
                self.tokenizer = AutoTokenizer.from_pretrained(model_name)

                # Set padding token
                if self.tokenizer.pad_token is None:
                    self.tokenizer.pad_token = self.tokenizer.eos_token

                # Load model with proper settings for deployment
                start_time = time.time()

                model_kwargs = {
                    "torch_dtype": torch.float16 if self.device == "cuda" else torch.float32,
                    "trust_remote_code": True,
                    "low_cpu_mem_usage": True,  # Important for deployment
                }

                if quantization_config:
                    model_kwargs["quantization_config"] = quantization_config
                    model_kwargs["device_map"] = "auto"

                self.model = AutoModelForCausalLM.from_pretrained(
                    model_name,
                    **model_kwargs
                )

                # Move to device if not using device_map
                if self.device == "cuda" and quantization_config is None:
                    self.model = self.model.to(self.device)

                load_time = time.time() - start_time
                print(f"✅ {model_name} loaded successfully! ({load_time:.1f} seconds)")

                # Test the model
                self.test_model()
                break  # Success, exit the loop

            except Exception as e:
                print(f"❌ {model_name} loading failed: {e}")
                if model_name == model_options[-1]:  # Last option failed
                    print("❌ All models failed to load")
                    self.model = None
                    self.tokenizer = None
                continue

    def test_model(self):
        """Test the loaded model with a simple query"""
        print("🧪 Testing model...")
        try:
            test_prompt = "Fever in children can be caused by"
            inputs = self.tokenizer(test_prompt, return_tensors="pt")

            if self.device == "cuda":
                inputs = {k: v.to(self.device) for k, v in inputs.items()}

            with torch.no_grad():
                outputs = self.model.generate(
                    **inputs,
                    max_new_tokens=20,
                    do_sample=True,
                    temperature=0.7,
                    pad_token_id=self.tokenizer.eos_token_id
                )

            response = self.tokenizer.decode(outputs[0], skip_special_tokens=True)
            print(f"✅ Model test successful!")
            print(f"   Test response: {response}")

        except Exception as e:
            print(f"⚠️ Model test failed: {e}")

    def load_medical_data(self, file_path: str):
        """Load and process medical data with progress tracking"""
        print(f"📖 Loading medical data from {file_path}...")

        try:
            with open(file_path, 'r', encoding='utf-8') as f:
                text = f.read()
            print(f"📄 File loaded: {len(text):,} characters")
        except FileNotFoundError:
            print(f"❌ File {file_path} not found!")
            return False
        except Exception as e:
            print(f"❌ Error loading file: {e}")
            return False

        # Create chunks optimized for medical content
        print("📝 Creating medical-optimized chunks...")
        chunks = self.create_medical_chunks(text)
        print(f"📋 Created {len(chunks)} medical chunks")

        self.knowledge_chunks = chunks

        # Generate embeddings with progress and add to FAISS index
        if self.use_embeddings and self.embedding_model and self.faiss_ready:
            return self.generate_embeddings_with_progress(chunks)

        print("✅ Medical data loaded (text search mode)")
        return True

    def create_medical_chunks(self, text: str, chunk_size: int = 400) -> List[Dict]:
        """Create medically-optimized text chunks"""
        chunks = []

        # Split by medical sections first
        medical_sections = self.split_by_medical_sections(text)

        chunk_id = 0
        for section in medical_sections:
            if len(section.split()) > chunk_size:
                # Split large sections by sentences
                sentences = re.split(r'[.!?]+', section)
                current_chunk = ""

                for sentence in sentences:
                    sentence = sentence.strip()
                    if not sentence:
                        continue

                    if len(current_chunk.split()) + len(sentence.split()) < chunk_size:
                        current_chunk += sentence + ". "
                    else:
                        if current_chunk.strip():
                            chunks.append({
                                'id': chunk_id,
                                'text': current_chunk.strip(),
                                'medical_focus': self.identify_medical_focus(current_chunk)
                            })
                            chunk_id += 1
                        current_chunk = sentence + ". "

                if current_chunk.strip():
                    chunks.append({
                        'id': chunk_id,
                        'text': current_chunk.strip(),
                        'medical_focus': self.identify_medical_focus(current_chunk)
                    })
                    chunk_id += 1
            else:
                chunks.append({
                    'id': chunk_id,
                    'text': section,
                    'medical_focus': self.identify_medical_focus(section)
                })
                chunk_id += 1

        return chunks

    def split_by_medical_sections(self, text: str) -> List[str]:
        """Split text by medical sections"""
        # Look for medical section headers
        section_patterns = [
            r'\n\s*(?:SYMPTOMS?|TREATMENT|DIAGNOSIS|CAUSES?|PREVENTION|MANAGEMENT).*?\n',
            r'\n\s*\d+\.\s+',  # Numbered sections
            r'\n\n+'  # Paragraph breaks
        ]

        sections = [text]
        for pattern in section_patterns:
            new_sections = []
            for section in sections:
                splits = re.split(pattern, section, flags=re.IGNORECASE)
                new_sections.extend([s.strip() for s in splits if len(s.strip()) > 100])
            sections = new_sections

        return sections

    def identify_medical_focus(self, text: str) -> str:
        """Identify the medical focus of a text chunk"""
        text_lower = text.lower()

        # Medical categories
        categories = {
            'pediatric_symptoms': ['fever', 'cough', 'rash', 'vomiting', 'diarrhea'],
            'treatments': ['treatment', 'therapy', 'medication', 'antibiotics'],
            'diagnosis': ['diagnosis', 'diagnostic', 'symptoms', 'signs'],
            'emergency': ['emergency', 'urgent', 'serious', 'hospital'],
            'prevention': ['prevention', 'vaccine', 'immunization', 'avoid']
        }

        for category, keywords in categories.items():
            if any(keyword in text_lower for keyword in keywords):
                return category

        return 'general_medical'

    def generate_embeddings_with_progress(self, chunks: List[Dict]) -> bool:
        """Generate embeddings with progress tracking and add to FAISS index"""
        print("🔮 Generating medical embeddings and adding to FAISS index...")

        if not self.embedding_model or not self.faiss_index:
            print("❌ Embedding model or FAISS index not available.")
            return False

        try:
            texts = [chunk['text'] for chunk in chunks]

            # Generate embeddings in batches with progress
            batch_size = 32
            all_embeddings = []

            for i in range(0, len(texts), batch_size):
                batch_texts = texts[i:i+batch_size]
                batch_embeddings = self.embedding_model.encode(batch_texts, show_progress_bar=False)
                all_embeddings.extend(batch_embeddings)

                # Show progress
                progress = min(i + batch_size, len(texts))
                print(f"   Progress: {progress}/{len(texts)} chunks processed", end='\r')

            print(f"\n   ✅ Generated embeddings for {len(texts)} chunks")

            # Add embeddings to FAISS index
            print("💾 Adding embeddings to FAISS index...")
            self.faiss_index.add(np.array(all_embeddings))

            print("✅ Medical embeddings added to FAISS index successfully!")
            return True

        except Exception as e:
            print(f"❌ Embedding generation or FAISS add failed: {e}")
            return False

    def retrieve_medical_context(self, query: str, n_results: int = 3) -> List[str]:
        """Retrieve relevant medical context using embeddings or keyword search"""
        if self.use_embeddings and self.embedding_model and self.faiss_ready:
            try:
                # Generate query embedding
                query_embedding = self.embedding_model.encode([query])

                # Search for similar content in FAISS index
                distances, indices = self.faiss_index.search(np.array(query_embedding), n_results)

                # Retrieve the corresponding chunks
                context_chunks = [self.knowledge_chunks[i]['text'] for i in indices[0] if i != -1]

                if context_chunks:
                    return context_chunks

            except Exception as e:
                print(f"⚠️ Embedding search failed: {e}")

        # Fallback to keyword search
        print("⚠️ Falling back to keyword search.")
        return self.keyword_search_medical(query, n_results)

    def keyword_search_medical(self, query: str, n_results: int) -> List[str]:
        """Medical-focused keyword search"""
        if not self.knowledge_chunks:
            return []

        query_words = set(query.lower().split())
        chunk_scores = []

        for chunk_info in self.knowledge_chunks:
            chunk_text = chunk_info['text']
            chunk_words = set(chunk_text.lower().split())

            # Calculate relevance score
            word_overlap = len(query_words.intersection(chunk_words))
            base_score = word_overlap / len(query_words) if query_words else 0

            # Boost medical content
            medical_boost = 0
            if chunk_info.get('medical_focus') in ['pediatric_symptoms', 'treatments', 'diagnosis']:
                medical_boost = 0.5

            final_score = base_score + medical_boost

            if final_score > 0:
                chunk_scores.append((final_score, chunk_text))

        # Return top matches
        chunk_scores.sort(reverse=True)
        return [chunk for _, chunk in chunk_scores[:n_results]]

    def generate_biogpt_response(self, context: str, query: str) -> str:
        """Generate medical response using BioGPT only"""
        if not self.model or not self.tokenizer:
            return "⚠️ Medical AI model not available. This chatbot requires BioGPT for accurate medical information. Please check the setup or try restarting."

        try:
            # Create medical-focused prompt
            prompt = f"""Medical Context: {context[:800]}

Question: {query}

Medical Answer:"""

            # Tokenize input
            inputs = self.tokenizer(
                prompt,
                return_tensors="pt",
                truncation=True,
                max_length=1024
            )

            # Move inputs to the correct device
            if self.device == "cuda":
                inputs = {k: v.to(self.device) for k, v in inputs.items()}

            # Generate response
            with torch.no_grad():
                outputs = self.model.generate(
                    **inputs,
                    max_new_tokens=150,
                    do_sample=True,
                    temperature=0.7,
                    top_p=0.9,
                    pad_token_id=self.tokenizer.eos_token_id,
                    repetition_penalty=1.1
                )

            # Decode response
            full_response = self.tokenizer.decode(outputs[0], skip_special_tokens=True)

            # Extract just the generated part
            if "Medical Answer:" in full_response:
                generated_response = full_response.split("Medical Answer:")[-1].strip()
            else:
                generated_response = full_response[len(prompt):].strip()

            # Clean up response
            cleaned_response = self.clean_medical_response(generated_response)

            return cleaned_response

        except Exception as e:
            print(f"⚠️ BioGPT generation failed: {e}")
            return "⚠️ Unable to generate medical response. The medical AI model encountered an error. Please try rephrasing your question or contact support."

    def clean_medical_response(self, response: str) -> str:
        """Clean and format medical response"""
        # Remove incomplete sentences and limit length
        sentences = re.split(r'[.!?]+', response)
        clean_sentences = []

        for sentence in sentences:
            sentence = sentence.strip()
            if len(sentence) > 10 and not sentence.endswith(('and', 'or', 'but', 'however')):
                clean_sentences.append(sentence)
            if len(clean_sentences) >= 3:  # Limit to 3 sentences
                break

        if clean_sentences:
            cleaned = '. '.join(clean_sentences) + '.'
        else:
            cleaned = response[:200] + '...' if len(response) > 200 else response

        return cleaned

    def fallback_response(self, context: str, query: str) -> str:
        """Fallback response when BioGPT fails"""
        # Extract key sentences from context
        sentences = [s.strip() for s in context.split('.') if len(s.strip()) > 20]

        if sentences:
            response = sentences[0] + '.'
            if len(sentences) > 1:
                response += ' ' + sentences[1] + '.'
        else:
            response = context[:300] + '...'

        return response

    def handle_conversational_interactions(self, query: str) -> Optional[str]:
        """Handle comprehensive conversational interactions"""
        query_lower = query.lower().strip()

        # Use more specific patterns for greetings
        greeting_patterns = [
            r'^\s*(hello|hi|hey|hiya|howdy)\s*$',
            r'^\s*(good morning|good afternoon|good evening|good day)\s*$',
            r'^\s*(what\'s up|whats up|sup|yo)\s*$',
            r'^\s*(greetings|salutations)\s*$',
            r'^\s*(how are you|how are you doing|how\'s it going|hows it going)\s*$',
            r'^\s*(good to meet you|nice to meet you|pleased to meet you)\s*$'
        ]

        for pattern in greeting_patterns:
            if re.match(pattern, query_lower):
                responses = [
                    "👋 Hello! I'm BioGPT, your professional medical AI assistant specialized in pediatric medicine. I'm here to provide evidence-based medical information. What health concern can I help you with today?",
                    "🏥 Hi there! I'm a medical AI assistant powered by BioGPT, trained on medical literature. I can help answer questions about children's health and medical conditions. How can I assist you?",
                    "👋 Greetings! I'm your AI medical consultant, ready to help with pediatric health questions using the latest medical knowledge. What would you like to know about?"
                ]
                return np.random.choice(responses)

        # Handle thanks and other conversational patterns...
        # (keeping the rest of the conversational handling as before)
        
        # Return None if no conversational pattern matches
        return None

    def chat(self, query: str) -> str:
        """Main chat function with BioGPT medical-only responses"""
        if not query.strip():
            return "Hello! I'm BioGPT, your professional medical AI assistant. How can I help you with pediatric medical questions today?"

        # Handle comprehensive conversational interactions first
        conversational_response = self.handle_conversational_interactions(query)
        if conversational_response:
            # Add to conversation history
            self.conversation_history.append({
                'query': query,
                'response': conversational_response,
                'timestamp': datetime.now().isoformat(),
                'type': 'conversational'
            })
            return conversational_response

        # Check if medical model is available
        if not self.model or not self.tokenizer:
            return "⚠️ **Medical AI Unavailable**: This chatbot requires BioGPT for accurate medical information. The medical model failed to load. Please contact support or try restarting the application."

        if not self.knowledge_chunks:
            return "Please load medical data first to access the medical knowledge base."

        print(f"🔍 Processing medical query: {query}")

        # Retrieve relevant medical context using FAISS or keyword search
        start_time = time.time()
        context = self.retrieve_medical_context(query)
        retrieval_time = time.time() - start_time

        if not context:
            return "I don't have specific information about this topic in my medical database. Please consult with a healthcare professional for personalized medical advice."

        print(f"   📚 Context retrieved ({retrieval_time:.2f}s)")

        # Generate response with BioGPT
        start_time = time.time()
        main_context = '\n\n'.join(context)
        response = self.generate_biogpt_response(main_context, query)
        generation_time = time.time() - start_time

        print(f"   🧠 Response generated ({generation_time:.2f}s)")

        # Format final response
        final_response = f"🩺 **Medical Information:** {response}\n\n⚠️ **Important:** This information is for educational purposes only. Always consult with qualified healthcare professionals for medical diagnosis, treatment, and personalized advice."

        # Add to conversation history
        self.conversation_history.append({
            'query': query,
            'response': final_response,
            'timestamp': datetime.now().isoformat(),
            'retrieval_time': retrieval_time,
            'generation_time': generation_time,
            'type': 'medical'
        })

        return final_response

    def get_conversation_summary(self) -> Dict:
        """Get conversation statistics"""
        if not self.conversation_history:
            return {"message": "No conversations yet"}

        # Filter medical conversations for performance stats
        medical_conversations = [h for h in self.conversation_history if h.get('type') == 'medical']

        if not medical_conversations:
            return {
                "total_conversations": len(self.conversation_history),
                "medical_conversations": 0,
                "conversational_interactions": len(self.conversation_history),
                "model_info": "BioGPT" if self.model and "BioGPT" in str(type(self.model)) else "Fallback Model",
                "vector_search": "FAISS CPU" if self.faiss_ready else "Keyword Search",
                "device": self.device
            }

        avg_retrieval_time = sum(h.get('retrieval_time', 0) for h in medical_conversations) / len(medical_conversations)
        avg_generation_time = sum(h.get('generation_time', 0) for h in medical_conversations) / len(medical_conversations)

        return {
            "total_conversations": len(self.conversation_history),
            "medical_conversations": len(medical_conversations),
            "conversational_interactions": len(self.conversation_history) - len(medical_conversations),
            "avg_retrieval_time": f"{avg_retrieval_time:.2f}s",
            "avg_generation_time": f"{avg_generation_time:.2f}s",
            "model_info": "BioGPT" if self.model and "BioGPT" in str(type(self.model)) else "Fallback Model",
            "vector_search": "FAISS CPU" if self.faiss_ready else "Keyword Search",
            "device": self.device,
            "quantization": "8-bit" if self.use_8bit else "16-bit/32-bit"
        }