import os import json import logging import torch from txagent import TxAgent import gradio as gr from tooluniverse import ToolUniverse # Configuration - Using remote Hugging Face models CONFIG = { "model_name": "mims-harvard/TxAgent-T1-Llama-3.1-8B", "rag_model_name": "mims-harvard/ToolRAG-T1-GTE-Qwen2-1.5B", "embedding_filename": "ToolRAG-T1-GTE-Qwen2-1.5Btool_embedding_47dc56b3e3ddeb31af4f19defdd538d984de1500368852a0fab80bc2e826c944.pt", "tool_files": { "new_tool": "./data/new_tool.json" } } # Logging setup logging.basicConfig( level=logging.INFO, format='%(asctime)s - %(name)s - %(levelname)s - %(message)s' ) logger = logging.getLogger(__name__) def prepare_tool_files(): os.makedirs("./data", exist_ok=True) if not os.path.exists(CONFIG["tool_files"]["new_tool"]): logger.info("Generating tool list using ToolUniverse...") tu = ToolUniverse() tools = tu.get_all_tools() with open(CONFIG["tool_files"]["new_tool"], "w") as f: json.dump(tools, f, indent=2) logger.info(f"Saved {len(tools)} tools to {CONFIG['tool_files']['new_tool']}") def load_embeddings(agent): embedding_path = CONFIG["embedding_filename"] if os.path.exists(embedding_path): logger.info("✅ Loading pre-generated embeddings file") try: embeddings = torch.load(embedding_path) agent.rag_model.tool_desc_embedding = embeddings return except Exception as e: logger.error(f"Failed to load embeddings: {e}") logger.info("Generating tool embeddings...") try: tools = agent.tooluniverse.get_all_tools() descriptions = [tool["description"] for tool in tools] embeddings = agent.rag_model.generate_embeddings(descriptions) torch.save(embeddings, embedding_path) agent.rag_model.tool_desc_embedding = embeddings logger.info(f"Embeddings saved to {embedding_path}") except Exception as e: logger.error(f"Failed to generate embeddings: {e}") raise class TxAgentApp: def __init__(self): self.agent = None self.is_initialized = False def initialize(self): if self.is_initialized: return "✅ Already initialized" try: logger.info("Initializing TxAgent with remote models...") # Initialize without local_files_only parameter self.agent = TxAgent( CONFIG["model_name"], CONFIG["rag_model_name"], tool_files_dict=CONFIG["tool_files"], force_finish=True, enable_checker=True, step_rag_num=10, seed=100, additional_default_tools=["DirectResponse", "RequireClarification"] ) logger.info("Loading models from Hugging Face Hub...") self.agent.init_model() logger.info("Preparing embeddings...") load_embeddings(self.agent) self.is_initialized = True return "✅ TxAgent initialized successfully (using remote models)" except Exception as e: logger.error(f"Initialization failed: {str(e)}") return f"❌ Initialization failed: {str(e)}" def chat(self, message, history): if not self.is_initialized: return history + [(message, "⚠️ Please initialize the model first")] try: response = "" for chunk in self.agent.run_gradio_chat( message=message, history=history, temperature=0.3, max_new_tokens=1024, max_tokens=8192, multi_agent=False, conversation=[], max_round=30 ): response += chunk yield history + [(message, response)] except Exception as e: logger.error(f"Chat error: {str(e)}") yield history + [(message, f"Error: {str(e)}")] def create_interface(): app = TxAgentApp() with gr.Blocks( title="TxAgent", css=""" .gradio-container {max-width: 900px !important} """ ) as demo: gr.Markdown(""" # 🧠 TxAgent: Therapeutic Reasoning AI ### (Running with remote Hugging Face models) """) with gr.Row(): init_btn = gr.Button("Initialize Model", variant="primary") init_status = gr.Textbox(label="Status", interactive=False) chatbot = gr.Chatbot(height=500, label="Conversation") msg = gr.Textbox(label="Your clinical question") clear_btn = gr.Button("Clear Chat") gr.Examples( examples=[ "How to adjust Journavx for renal impairment?", "Xolremdi and Prozac interaction in WHIM syndrome?", "Alternative to Warfarin for patient with amiodarone?" ], inputs=msg ) init_btn.click( fn=app.initialize, outputs=init_status ) msg.submit( fn=app.chat, inputs=[msg, chatbot], outputs=chatbot ) clear_btn.click( fn=lambda: ([], ""), outputs=[chatbot, msg] ) return demo if __name__ == "__main__": try: logger.info("Starting application...") # Prepare local tool files prepare_tool_files() # Launch interface interface = create_interface() interface.launch( server_name="0.0.0.0", server_port=7860, share=False ) except Exception as e: logger.error(f"Fatal error: {str(e)}") raise