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README.md

@@ -6,9 +6,10 @@ tags:
 - genomics
 - single-cell
 - model_cls_name:SCVI
-- scvi_version:1.2.1
+- scvi_version:1.2.0
 - anndata_version:0.11.1
 - modality:rna
+- tissue:synthetic
 - annotated:False
 ---
 
@@ -50,10 +51,10 @@ space might still be useful for analysis.
 
 | Metric                  | Training Value | Validation Value |
 |-------------------------|----------------|------------------|
-| Mean Absolute Error | 0.99  | 1.03           |
-| Pearson Correlation | -0.07  | -0.20  |
-| Spearman Correlation | -0.07 | -0.03  |
-| R² (R-Squared) | -14.43  | -12.71      |
+| Mean Absolute Error | 1.03  | 1.03           |
+| Pearson Correlation | 0.04  | 0.30  |
+| Spearman Correlation | 0.02 | 0.29  |
+| R² (R-Squared) | -26.25  | -33.18      |
 
 The gene-wise coefficient of variation summarizes how well variation between different genes is
 preserved by the generated model expression. This value is usually quite high.
@@ -63,9 +64,9 @@ preserved by the generated model expression. This value is usually quite high.
 | Metric                  | Training Value |
 |-------------------------|----------------|
 | Mean Absolute Error | 1.07   |
-| Pearson Correlation | -0.12  |
-| Spearman Correlation | -0.00 |
-| R² (R-Squared) | -2.15  |
+| Pearson Correlation | 0.15  |
+| Spearman Correlation | 0.18 |
+| R² (R-Squared) | -2.81  |
 
 </details>
 
@@ -82,18 +83,17 @@ cell-type.
 
 | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
 | --- | --- | --- | --- | --- | --- | --- | --- |
-| 0 | 1.00 | 0.90 | 0.06 | 0.05 | 0.47 | 0.34 | 50.00 |
-| 1 | 1.00 | 0.94 | -0.10 | -0.10 | 0.34 | 0.16 | 48.00 |
-| 2 | 1.00 | 0.94 | -0.02 | -0.03 | 0.53 | 0.37 | 41.00 |
-| 3 | 1.00 | 0.82 | 0.17 | 0.15 | 0.56 | 0.36 | 39.00 |
-| 4 | 1.00 | 0.99 | 0.03 | -0.02 | 0.34 | 0.16 | 37.00 |
-| 5 | 1.00 | 0.95 | 0.07 | 0.04 | 0.64 | 0.36 | 37.00 |
-| 6 | 1.00 | 1.04 | -0.14 | -0.15 | 0.48 | 0.23 | 32.00 |
-| 7 | 1.00 | 1.01 | 0.14 | 0.13 | 0.52 | 0.19 | 31.00 |
-| 8 | 1.00 | 0.99 | 0.04 | 0.07 | 0.54 | 0.23 | 28.00 |
-| 9 | 1.00 | 1.09 | 0.05 | 0.04 | 0.45 | 0.28 | 26.00 |
-| 10 | 1.00 | 1.21 | 0.09 | 0.10 | 0.54 | 0.24 | 19.00 |
-| 11 | 1.00 | 1.97 | -0.01 | -0.08 | 0.53 | 0.32 | 12.00 |
+| 0 | 1.00 | 0.87 | 0.04 | 0.06 | 0.50 | 0.33 | 51.00 |
+| 1 | 1.00 | 0.80 | 0.18 | 0.11 | 0.41 | 0.17 | 49.00 |
+| 2 | 1.00 | 0.90 | 0.03 | 0.09 | 0.64 | 0.39 | 42.00 |
+| 3 | 1.00 | 1.00 | -0.16 | -0.13 | 0.41 | 0.32 | 41.00 |
+| 4 | 1.00 | 0.90 | 0.11 | 0.08 | 0.41 | 0.22 | 41.00 |
+| 5 | 1.00 | 0.92 | 0.05 | 0.08 | 0.47 | 0.33 | 40.00 |
+| 6 | 1.00 | 0.94 | 0.02 | 0.01 | 0.49 | 0.34 | 36.00 |
+| 7 | 1.00 | 1.01 | -0.07 | -0.05 | 0.49 | 0.21 | 36.00 |
+| 8 | 1.00 | 1.13 | 0.01 | 0.02 | 0.49 | 0.13 | 25.00 |
+| 9 | 1.00 | 1.18 | 0.16 | 0.09 | 0.42 | 0.25 | 22.00 |
+| 10 | 1.00 | 1.31 | -0.01 | 0.02 | 0.54 | 0.27 | 17.00 |
 
 </details>
 
@@ -183,4 +183,4 @@ training process, the code is available at the link below.
 
 # References
 
-To be added...
+scvi-tools team