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tabula_sapiens_Liver

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Liver
Model card Files Community
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@@ -32,59 +32,59 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
- | hepatocyte | 712 | 0.99 | 0.98 | 0.97 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
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- | macrophage | 326 | 0.88 | 0.88 | 0.90 | 0.90 | 0.00 | 0.90 | 0.92 | 0.94 | 0.95 |
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- | endothelial cell | 172 | 0.97 | 0.97 | 0.97 | 0.96 | 0.00 | 0.98 | 0.97 | 0.96 | 0.98 |
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- | monocyte | 181 | 0.42 | 0.62 | 0.61 | 0.59 | 0.00 | 0.51 | 0.45 | 0.55 | 0.59 |
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- | CD8-positive, alpha-beta T cell | 120 | 0.84 | 0.83 | 0.83 | 0.58 | 0.00 | 0.79 | 0.82 | 0.84 | 0.88 |
40
- | erythrocyte | 109 | 0.99 | 0.94 | 0.99 | 0.97 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
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- | mature NK T cell | 70 | 0.64 | 0.49 | 0.65 | 0.47 | 0.00 | 0.52 | 0.52 | 0.68 | 0.66 |
42
- | plasma cell | 78 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 1.00 | 0.99 | 0.98 | 1.00 |
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- | natural killer cell | 88 | 0.76 | 0.74 | 0.75 | 0.41 | 0.00 | 0.74 | 0.74 | 0.83 | 0.81 |
44
- | neutrophil | 76 | 0.95 | 0.94 | 0.79 | 0.88 | 0.00 | 0.91 | 0.93 | 0.91 | 0.97 |
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- | intrahepatic cholangiocyte | 77 | 0.99 | 0.98 | 0.97 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
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- | intermediate monocyte | 61 | 0.44 | 0.27 | 0.47 | 0.29 | 0.00 | 0.40 | 0.37 | 0.50 | 0.50 |
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- | classical monocyte | 29 | 0.21 | 0.00 | 0.11 | 0.12 | 0.00 | 0.25 | 0.23 | 0.36 | 0.04 |
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- | CD4-positive, alpha-beta T cell | 29 | 0.66 | 0.37 | 0.57 | 0.27 | 0.00 | 0.53 | 0.59 | 0.73 | 0.72 |
49
- | hepatic stellate cell | 23 | 0.76 | 0.44 | 0.67 | 0.53 | 0.00 | 0.84 | 0.94 | 0.86 | 0.90 |
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- | B cell | 18 | 0.95 | 0.92 | 0.95 | 0.63 | 0.00 | 0.95 | 0.95 | 0.92 | 0.95 |
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- | fibroblast | 15 | 0.62 | 0.65 | 0.70 | 0.55 | 0.00 | 0.83 | 0.94 | 0.91 | 0.88 |
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- | non-classical monocyte | 12 | 0.63 | 0.00 | 0.61 | 0.22 | 0.00 | 0.69 | 0.81 | 0.88 | 0.83 |
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- | myeloid cell | 4 | 0.25 | 0.00 | 0.00 | 0.22 | 0.00 | 0.27 | 0.86 | 0.67 | 0.22 |
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- | myeloid dendritic cell | 8 | 0.00 | 0.00 | 0.36 | 0.55 | 0.00 | 0.47 | 0.80 | 0.67 | 0.71 |
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- | hematopoietic precursor cell | 6 | 0.00 | 0.50 | 0.50 | 0.50 | 0.00 | 0.73 | 0.50 | 0.55 | 0.67 |
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- | T cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
57
- | mast cell | 3 | 0.75 | 0.86 | 1.00 | 0.50 | 0.00 | 0.67 | 0.86 | 1.00 | 0.86 |
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  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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60
  The train accuracies are computed on the training data.
61
 
62
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
63
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | hepatocyte | 6702 | 0.99 | 0.97 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
65
- | macrophage | 2906 | 0.88 | 0.88 | 0.94 | 0.91 | 0.00 | 0.91 | 0.93 | 0.95 | 0.96 |
66
- | endothelial cell | 1602 | 0.98 | 0.96 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
67
- | monocyte | 1540 | 0.43 | 0.62 | 0.76 | 0.71 | 0.00 | 0.62 | 0.70 | 0.73 | 0.82 |
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- | CD8-positive, alpha-beta T cell | 1170 | 0.81 | 0.81 | 0.86 | 0.72 | 0.00 | 0.84 | 0.89 | 0.92 | 0.90 |
69
- | erythrocyte | 871 | 0.99 | 0.90 | 0.99 | 0.97 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
70
- | mature NK T cell | 738 | 0.63 | 0.48 | 0.76 | 0.62 | 0.00 | 0.72 | 0.85 | 0.89 | 0.84 |
71
- | plasma cell | 688 | 0.96 | 0.96 | 0.99 | 0.96 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
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- | natural killer cell | 657 | 0.69 | 0.65 | 0.79 | 0.55 | 0.00 | 0.79 | 0.89 | 0.90 | 0.88 |
73
- | neutrophil | 663 | 0.93 | 0.79 | 0.94 | 0.89 | 0.00 | 0.95 | 0.97 | 0.98 | 0.97 |
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- | intrahepatic cholangiocyte | 588 | 0.97 | 0.97 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
75
- | intermediate monocyte | 496 | 0.42 | 0.28 | 0.65 | 0.45 | 0.00 | 0.56 | 0.72 | 0.75 | 0.79 |
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- | classical monocyte | 297 | 0.28 | 0.06 | 0.49 | 0.33 | 0.00 | 0.50 | 0.73 | 0.75 | 0.79 |
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- | CD4-positive, alpha-beta T cell | 262 | 0.57 | 0.44 | 0.63 | 0.39 | 0.00 | 0.69 | 0.84 | 0.89 | 0.82 |
78
- | hepatic stellate cell | 200 | 0.77 | 0.33 | 0.85 | 0.72 | 0.00 | 0.89 | 0.96 | 0.96 | 0.96 |
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- | B cell | 145 | 0.94 | 0.93 | 0.96 | 0.80 | 0.00 | 0.97 | 1.00 | 0.99 | 0.98 |
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- | fibroblast | 146 | 0.70 | 0.63 | 0.82 | 0.75 | 0.00 | 0.93 | 0.98 | 0.99 | 0.98 |
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- | non-classical monocyte | 101 | 0.47 | 0.13 | 0.85 | 0.39 | 0.00 | 0.89 | 0.84 | 0.86 | 0.88 |
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- | myeloid cell | 77 | 0.62 | 0.00 | 0.45 | 0.62 | 0.00 | 0.75 | 0.92 | 0.90 | 0.93 |
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- | myeloid dendritic cell | 48 | 0.00 | 0.00 | 0.41 | 0.26 | 0.00 | 0.64 | 0.87 | 0.83 | 0.83 |
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- | hematopoietic precursor cell | 35 | 0.00 | 0.33 | 0.68 | 0.52 | 0.00 | 0.81 | 0.97 | 0.97 | 0.92 |
85
- | T cell | 27 | 0.00 | 0.00 | 0.07 | 0.06 | 0.00 | 0.63 | 1.00 | 0.98 | 0.92 |
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- | mast cell | 25 | 0.88 | 0.57 | 0.96 | 0.67 | 0.00 | 0.54 | 1.00 | 0.96 | 1.00 |
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- | plasmacytoid dendritic cell | 8 | 0.00 | 0.00 | 0.88 | 0.71 | 0.00 | 0.78 | 1.00 | 1.00 | 1.00 |
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  </details>
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33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | hepatocyte | 714 | 0.99 | 0.98 | 0.97 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |
36
+ | macrophage | 330 | 0.90 | 0.88 | 0.92 | 0.83 | 0.00 | 0.90 | 0.91 | 0.95 | 0.94 |
37
+ | endothelial cell | 178 | 0.98 | 0.98 | 0.98 | 0.96 | 0.00 | 0.97 | 0.97 | 0.97 | 0.97 |
38
+ | monocyte | 181 | 0.26 | 0.63 | 0.64 | 0.51 | 0.00 | 0.48 | 0.42 | 0.52 | 0.59 |
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+ | CD8-positive, alpha-beta T cell | 120 | 0.86 | 0.83 | 0.83 | 0.61 | 0.00 | 0.76 | 0.77 | 0.85 | 0.89 |
40
+ | erythrocyte | 110 | 0.97 | 0.94 | 0.99 | 0.97 | 0.00 | 0.97 | 0.99 | 0.94 | 0.99 |
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+ | mature NK T cell | 68 | 0.63 | 0.56 | 0.62 | 0.48 | 0.00 | 0.58 | 0.58 | 0.66 | 0.68 |
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+ | plasma cell | 73 | 1.00 | 0.99 | 0.98 | 0.99 | 0.00 | 1.00 | 0.99 | 0.98 | 0.99 |
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+ | natural killer cell | 88 | 0.72 | 0.74 | 0.73 | 0.53 | 0.00 | 0.66 | 0.74 | 0.81 | 0.80 |
44
+ | neutrophil | 76 | 0.94 | 0.94 | 0.80 | 0.87 | 0.00 | 0.93 | 0.92 | 0.94 | 0.96 |
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+ | intrahepatic cholangiocyte | 73 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.97 | 1.00 |
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+ | intermediate monocyte | 62 | 0.49 | 0.27 | 0.49 | 0.20 | 0.00 | 0.40 | 0.44 | 0.48 | 0.51 |
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+ | classical monocyte | 30 | 0.26 | 0.00 | 0.07 | 0.11 | 0.00 | 0.25 | 0.25 | 0.32 | 0.17 |
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+ | CD4-positive, alpha-beta T cell | 28 | 0.65 | 0.41 | 0.65 | 0.05 | 0.00 | 0.55 | 0.52 | 0.74 | 0.72 |
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+ | hepatic stellate cell | 22 | 0.69 | 0.47 | 0.67 | 0.67 | 0.00 | 0.88 | 0.93 | 0.89 | 0.90 |
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+ | B cell | 18 | 0.86 | 0.92 | 0.95 | 0.81 | 0.00 | 0.92 | 0.95 | 0.92 | 0.95 |
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+ | fibroblast | 14 | 0.70 | 0.63 | 0.72 | 0.60 | 0.00 | 0.88 | 0.93 | 0.93 | 0.90 |
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+ | non-classical monocyte | 11 | 0.77 | 0.15 | 0.47 | 0.14 | 0.00 | 0.62 | 0.79 | 0.82 | 0.87 |
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+ | myeloid cell | 4 | 0.29 | 0.00 | 0.00 | 0.36 | 0.00 | 0.40 | 0.60 | 0.67 | 0.50 |
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+ | myeloid dendritic cell | 8 | 0.53 | 0.00 | 0.33 | 0.33 | 0.00 | 0.60 | 0.71 | 0.59 | 0.71 |
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+ | hematopoietic precursor cell | 6 | 0.00 | 0.67 | 0.67 | 0.44 | 0.00 | 0.80 | 0.80 | 0.36 | 0.67 |
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+ | T cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 |
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+ | mast cell | 3 | 0.00 | 0.86 | 0.80 | 0.57 | 0.00 | 0.60 | 0.86 | 1.00 | 1.00 |
58
  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
59
 
60
  The train accuracies are computed on the training data.
61
 
62
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
63
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
64
+ | hepatocyte | 6700 | 0.99 | 0.97 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
65
+ | macrophage | 2902 | 0.91 | 0.88 | 0.95 | 0.90 | 0.00 | 0.92 | 0.94 | 0.94 | 0.96 |
66
+ | endothelial cell | 1596 | 0.97 | 0.96 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
67
+ | monocyte | 1540 | 0.29 | 0.63 | 0.76 | 0.70 | 0.00 | 0.59 | 0.70 | 0.72 | 0.80 |
68
+ | CD8-positive, alpha-beta T cell | 1170 | 0.81 | 0.81 | 0.87 | 0.74 | 0.00 | 0.79 | 0.87 | 0.91 | 0.90 |
69
+ | erythrocyte | 870 | 0.98 | 0.89 | 0.99 | 0.97 | 0.00 | 0.98 | 0.99 | 0.97 | 0.99 |
70
+ | mature NK T cell | 740 | 0.66 | 0.53 | 0.75 | 0.67 | 0.00 | 0.74 | 0.84 | 0.87 | 0.84 |
71
+ | plasma cell | 693 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |
72
+ | natural killer cell | 657 | 0.69 | 0.66 | 0.79 | 0.61 | 0.00 | 0.77 | 0.88 | 0.89 | 0.88 |
73
+ | neutrophil | 663 | 0.93 | 0.80 | 0.95 | 0.89 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |
74
+ | intrahepatic cholangiocyte | 592 | 0.96 | 0.97 | 0.98 | 0.98 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |
75
+ | intermediate monocyte | 495 | 0.42 | 0.29 | 0.63 | 0.47 | 0.00 | 0.55 | 0.75 | 0.74 | 0.79 |
76
+ | classical monocyte | 296 | 0.30 | 0.07 | 0.46 | 0.41 | 0.00 | 0.54 | 0.73 | 0.76 | 0.80 |
77
+ | CD4-positive, alpha-beta T cell | 263 | 0.54 | 0.41 | 0.66 | 0.48 | 0.00 | 0.64 | 0.81 | 0.87 | 0.79 |
78
+ | hepatic stellate cell | 201 | 0.74 | 0.35 | 0.84 | 0.80 | 0.00 | 0.94 | 0.97 | 0.95 | 0.97 |
79
+ | B cell | 145 | 0.86 | 0.95 | 0.97 | 0.86 | 0.00 | 0.93 | 0.99 | 0.98 | 0.98 |
80
+ | fibroblast | 147 | 0.77 | 0.66 | 0.80 | 0.84 | 0.00 | 0.96 | 0.99 | 0.98 | 0.96 |
81
+ | non-classical monocyte | 102 | 0.66 | 0.11 | 0.83 | 0.47 | 0.00 | 0.80 | 0.83 | 0.84 | 0.88 |
82
+ | myeloid cell | 77 | 0.54 | 0.00 | 0.51 | 0.63 | 0.00 | 0.73 | 0.88 | 0.84 | 0.84 |
83
+ | myeloid dendritic cell | 48 | 0.41 | 0.00 | 0.47 | 0.28 | 0.00 | 0.65 | 0.76 | 0.71 | 0.84 |
84
+ | hematopoietic precursor cell | 35 | 0.00 | 0.27 | 0.56 | 0.59 | 0.00 | 0.92 | 0.97 | 0.99 | 0.92 |
85
+ | T cell | 27 | 0.00 | 0.00 | 0.07 | 0.18 | 0.00 | 0.79 | 0.98 | 1.00 | 0.90 |
86
+ | mast cell | 25 | 0.00 | 0.60 | 0.96 | 0.91 | 0.00 | 0.98 | 1.00 | 0.94 | 1.00 |
87
+ | plasmacytoid dendritic cell | 8 | 0.00 | 0.00 | 0.75 | 0.67 | 0.00 | 0.78 | 0.94 | 0.94 | 0.93 |
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  </details>
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