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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 888 | 0.97 | 0.96 | 0.97 | 0.95 | 0.00 | 0.85 | 0.95 | 0.95 | 0.98 |\n| CD4-positive, alpha-beta T cell | 298 | 0.83 | 0.87 | 0.84 | 0.83 | 0.00 | 0.84 | 0.86 | 0.89 | 0.87 |\n| CD8-positive, alpha-beta T cell | 245 | 0.80 | 0.86 | 0.83 | 0.79 | 0.00 | 0.82 | 0.82 | 0.87 | 0.85 |\n| monocyte | 237 | 0.78 | 0.81 | 0.82 | 0.79 | 0.00 | 0.75 | 0.66 | 0.79 | 0.82 |\n| B cell | 191 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| hematopoietic precursor cell | 170 | 0.80 | 0.82 | 0.84 | 0.82 | 0.00 | 0.75 | 0.82 | 0.84 | 0.86 |\n| plasma cell | 135 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 100 | 0.94 | 0.95 | 0.97 | 0.92 | 0.00 | 0.94 | 0.92 | 0.95 | 0.96 |\n| erythroid progenitor cell | 100 | 0.70 | 0.73 | 0.70 | 0.68 | 0.00 | 0.72 | 0.80 | 0.84 | 0.81 |\n| hematopoietic stem cell | 79 | 0.76 | 0.82 | 0.83 | 0.77 | 0.00 | 0.84 | 0.77 | 0.85 | 0.86 |\n| granulocyte | 61 | 0.68 | 0.33 | 0.64 | 0.38 | 0.00 | 0.28 | 0.63 | 0.64 | 0.75 |\n| erythrocyte | 46 | 0.51 | 0.58 | 0.63 | 0.51 | 0.00 | 0.64 | 0.79 | 0.77 | 0.66 |\n| common myeloid progenitor | 51 | 0.71 | 0.75 | 0.63 | 0.67 | 0.00 | 0.73 | 0.76 | 0.81 | 0.84 |\n| macrophage | 37 | 0.61 | 0.52 | 0.74 | 0.39 | 0.00 | 0.70 | 0.67 | 0.72 | 0.77 |\n| classical monocyte | 21 | 0.00 | 0.09 | 0.21 | 0.10 | 0.00 | 0.22 | 0.11 | 0.25 | 0.07 |\n| intermediate monocyte | 19 | 0.47 | 0.49 | 0.42 | 0.27 | 0.00 | 0.30 | 0.38 | 0.51 | 0.53 |\n| myeloid dendritic cell | 6 | 0.48 | 0.22 | 0.55 | 0.62 | 0.00 | 0.31 | 0.40 | 0.45 | 0.60 |\n| T cell | 12 | 0.72 | 0.50 | 0.60 | 0.40 | 0.00 | 0.42 | 0.69 | 0.63 | 0.74 |\n| mature NK T cell | 6 | 0.00 | 0.29 | 0.50 | 0.00 | 0.00 | 0.36 | 0.29 | 0.22 | 0.29 |\n| non-classical monocyte | 6 | 0.00 | 0.50 | 0.00 | 0.25 | 0.00 | 0.60 | 0.25 | 0.33 | 0.50 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 |\n| fibroblast | 1 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.67 | 0.00 | 0.00 | 1.00 |\n| plasmacytoid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 | 0.67 | 0.00 | 1.00 | 0.67 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 7789 | 0.97 | 0.96 | 0.98 | 0.97 | 0.00 | 0.93 | 0.96 | 0.96 | 0.98 |\n| CD4-positive, alpha-beta T cell | 2875 | 0.85 | 0.86 | 0.90 | 0.88 | 0.00 | 0.87 | 0.89 | 0.91 | 0.90 |\n| CD8-positive, alpha-beta T cell | 2391 | 0.83 | 0.84 | 0.89 | 0.84 | 0.00 | 0.83 | 0.86 | 0.89 | 0.88 |\n| monocyte | 1803 | 0.77 | 0.80 | 0.86 | 0.85 | 0.00 | 0.79 | 0.82 | 0.88 | 0.89 |\n| B cell | 1628 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| hematopoietic precursor cell | 1550 | 0.83 | 0.86 | 0.92 | 0.91 | 0.00 | 0.81 | 0.87 | 0.91 | 0.93 |\n| plasma cell | 1313 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| natural killer cell | 999 | 0.93 | 0.94 | 0.95 | 0.91 | 0.00 | 0.95 | 0.96 | 0.96 | 0.98 |\n| erythroid progenitor cell | 871 | 0.72 | 0.75 | 0.84 | 0.83 | 0.00 | 0.88 | 0.92 | 0.95 | 0.94 |\n| hematopoietic stem cell | 713 | 0.78 | 0.83 | 0.89 | 0.89 | 0.00 | 0.89 | 0.94 | 0.95 | 0.94 |\n| granulocyte | 574 | 0.70 | 0.25 | 0.78 | 0.63 | 0.00 | 0.54 | 0.70 | 0.70 | 0.85 |\n| erythrocyte | 407 | 0.64 | 0.66 | 0.82 | 0.77 | 0.00 | 0.88 | 0.96 | 0.96 | 0.93 |\n| common myeloid progenitor | 402 | 0.62 | 0.66 | 0.78 | 0.80 | 0.00 | 0.83 | 0.90 | 0.94 | 0.92 |\n| macrophage | 321 | 0.59 | 0.52 | 0.75 | 0.70 | 0.00 | 0.81 | 0.91 | 0.94 | 0.93 |\n| classical monocyte | 210 | 0.00 | 0.00 | 0.40 | 0.42 | 0.00 | 0.55 | 0.71 | 0.79 | 0.71 |\n| intermediate monocyte | 205 | 0.42 | 0.44 | 0.65 | 0.62 | 0.00 | 0.72 | 0.88 | 0.94 | 0.84 |\n| myeloid dendritic cell | 102 | 0.62 | 0.51 | 0.74 | 0.73 | 0.00 | 0.58 | 0.79 | 0.86 | 0.86 |\n| T cell | 86 | 0.51 | 0.25 | 0.49 | 0.50 | 0.00 | 0.44 | 0.70 | 0.71 | 0.74 |\n| mature NK T cell | 58 | 0.00 | 0.44 | 0.47 | 0.15 | 0.00 | 0.73 | 0.95 | 0.96 | 0.94 |\n| non-classical monocyte | 47 | 0.00 | 0.27 | 0.42 | 0.46 | 0.00 | 0.89 | 0.97 | 0.95 | 0.91 |\n| basophil | 23 | 0.00 | 0.00 | 0.63 | 0.64 | 0.00 | 0.44 | 0.82 | 0.75 | 0.79 |\n| regulatory T cell | 13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.43 | 0.87 | 0.76 | 0.14 |\n| fibroblast | 10 | 0.00 | 0.39 | 0.58 | 0.33 | 0.00 | 0.56 | 1.00 | 0.95 | 0.86 |\n| plasmacytoid dendritic cell | 7 | 0.00 | 0.00 | 0.67 | 0.31 | 0.00 | 0.36 | 0.82 | 0.78 | 0.78 |\n| endothelial cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.50 |"
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celltypist.pkl

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checkpoint

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harmony_knn_classifier.joblib

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obo_dag.joblib

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pynndescent_index.joblib

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scanvi/model.pt

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scvi/model.pt

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scvi_knn_classifier.joblib

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svm_classifier_cuml.joblib

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xgboost_classifier.model

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