| ***Run inference like this:*** | |
| nnUNetv2_predict -d Dataset405_CAMUS_trainval_all -i INPUT_FOLDER -o OUTPUT_FOLDER -f 0 -tr nnUNetTrainer -c 2d -p nnUNetPlans | |
| ***Once inference is completed, run postprocessing like this:*** | |
| nnUNetv2_apply_postprocessing -i OUTPUT_FOLDER -o OUTPUT_FOLDER_PP -pp_pkl_file /home/gillesv/data/nnUNet_results/Dataset405_CAMUS_trainval_all/nnUNetTrainer__nnUNetPlans__2d/crossval_results_folds_0/postprocessing.pkl -np 8 -plans_json /home/gillesv/data/nnUNet_results/Dataset405_CAMUS_trainval_all/nnUNetTrainer__nnUNetPlans__2d/crossval_results_folds_0/plans.json | |