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- ---
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- annotations_creators:
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- - machine-generated
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- language_creators:
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- - machine-generated
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- license:
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- - mit
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- multilinguality:
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- - monolingual
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- pretty_name: pcba_686978
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- size_categories:
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- - 100K<n<1M
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- source_datasets: []
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- tags:
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- - bio
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- - bio-chem
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- - molnet
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- - molecule-net
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- - biophysics
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- task_categories:
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- - other
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- task_ids: []
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- ---
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-
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- # Dataset Card for pcba_686978
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-
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- ## Table of Contents
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- - [Table of Contents](#table-of-contents)
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- - [Dataset Description](#dataset-description)
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- - [Dataset Summary](#dataset-summary)
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- - [Supported Tasks and Leaderboards](#supported-tasks-and-leaderboards)
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- - [Languages](#languages)
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- - [Dataset Structure](#dataset-structure)
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- - [Data Instances](#data-instances)
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- - [Data Fields](#data-fields)
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- - [Data Splits](#data-splits)
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- - [Dataset Creation](#dataset-creation)
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- - [Curation Rationale](#curation-rationale)
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- - [Source Data](#source-data)
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- - [Annotations](#annotations)
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- - [Personal and Sensitive Information](#personal-and-sensitive-information)
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- - [Considerations for Using the Data](#considerations-for-using-the-data)
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- - [Social Impact of Dataset](#social-impact-of-dataset)
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- - [Discussion of Biases](#discussion-of-biases)
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- - [Other Known Limitations](#other-known-limitations)
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- - [Additional Information](#additional-information)
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- - [Dataset Curators](#dataset-curators)
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- - [Licensing Information](#licensing-information)
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- - [Citation Information](#citation-information)
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- - [Contributions](#contributions)
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-
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- ## Dataset Description
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-
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- - **Homepage: https://moleculenet.org/**
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- - **Repository: https://github.com/deepchem/deepchem/tree/master**
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- - **Paper: https://arxiv.org/abs/1703.00564**
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-
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- ### Dataset Summary
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-
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- `pcba_686978` is a dataset included in [MoleculeNet](https://moleculenet.org/). PubChem BioAssay (PCBA) is a database consisting of biological activities of small molecules generated by high-throughput screening. We have chosen one of the larger tasks (ID 686978) as described in https://par.nsf.gov/servlets/purl/10168888.
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-
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- ## Dataset Structure
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-
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- ### Data Fields
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-
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- Each split contains
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-
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- * `smiles`: the [SMILES](https://en.wikipedia.org/wiki/Simplified_molecular-input_line-entry_system) representation of a molecule
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- * `selfies`: the [SELFIES](https://github.com/aspuru-guzik-group/selfies) representation of a molecule
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- * `target`: Measured results (Active/Inactive) for bioassays
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-
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- ### Data Splits
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-
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- The dataset is split into an 80/10/10 train/valid/test split using random split.
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-
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- ### Source Data
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-
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- #### Initial Data Collection and Normalization
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-
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- Data was originially generated by the Pande Group at Standford
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-
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- ### Licensing Information
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-
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- This dataset was originally released under an MIT license
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-
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- ### Citation Information
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-
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- ```
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- @misc{https://doi.org/10.48550/arxiv.1703.00564,
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- doi = {10.48550/ARXIV.1703.00564},
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-
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- url = {https://arxiv.org/abs/1703.00564},
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-
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- author = {Wu, Zhenqin and Ramsundar, Bharath and Feinberg, Evan N. and Gomes, Joseph and Geniesse, Caleb and Pappu, Aneesh S. and Leswing, Karl and Pande, Vijay},
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-
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- keywords = {Machine Learning (cs.LG), Chemical Physics (physics.chem-ph), Machine Learning (stat.ML), FOS: Computer and information sciences, FOS: Computer and information sciences, FOS: Physical sciences, FOS: Physical sciences},
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-
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- title = {MoleculeNet: A Benchmark for Molecular Machine Learning},
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-
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- publisher = {arXiv},
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-
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- year = {2017},
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-
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- copyright = {arXiv.org perpetual, non-exclusive license}
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- }
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- ```
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-
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- ### Contributions
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-
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- Thanks to [@zanussbaum](https://github.com/zanussbaum) for adding this dataset.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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