43983310_ParseCNV__Explanation
[RedFlag] AvgConf [Default Report Threshold] <10 [Explanation] 
The HMM confidence score in PennCNV is a superior indication of CNV call confidence compared to numsnps and length in studies comparing de novo vs. inherited CNV calls, giving an indication of the strength of the CNV signal or aggregate difference in probability between the called CN and the next highest probability CN. Other CNV calling algorithms give different range confidence scores or lower values might mean more confidence (i.e. call p value) so threshold may need modification. It is recommended to be in .rawcnv file as column 8 i.e. �conf=20.659� but not required.
ParseCNV
Explanation