Traceback (most recent call last):


 "<stdin>", line 1, in <module>


 "/home/jenna/anaconda2/envs/chp-pirc/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1043, in run

runtime = self._run_wrapper(runtime)


 "/home/jenna/anaconda2/envs/chp-pirc/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1000, in _run_wrapper

runtime = self._run_interface(runtime)


 "/home/jenna/anaconda2/envs/chp-pirc/lib/python2.7/site-packages/nipype/interfaces/dcmstack.py", line 364, in _run_interface

for nii in niis
NameError: global name 'NiftiWrapper' is not defined


Traceback (most recent call last):


 "<string>", line 1, in <module>


 "/apps/gau/scanpy/setup.py", line 11, in <module>

from scanpy import __author__, __email__


 "/apps/gau/scanpy/scanpy/__init__.py", line 31, in <module>

from . import tools as tl


 "/apps/gau/scanpy/scanpy/tools/__init__.py", line 1, in <module>

from ..preprocessing._simple import pca


 "/apps/gau/scanpy/scanpy/preprocessing/__init__.py", line 7, in <module>

from ._combat import combat


 "/apps/gau/scanpy/scanpy/preprocessing/_combat.py", line 111, in <module>

def combat(adata: AnnData, key: str = 'batch', inplace: bool = True):

NameError: name 'AnnData' is not defined
