Traceback (most recent call last):


 "/usr/local/bin/bcbio_nextgen.py", line 245, in <module>

main(**kwargs)


 "/usr/local/bin/bcbio_nextgen.py", line 46, in main

run_main(**kwargs)


 "/usr/local/share/bcbio-nextgen/anaconda/lib/python3.6/site-packages/bcbio/pipeline/main.py", line 50, in run_main

fc_dir, run_info_yaml)


 "/usr/local/share/bcbio-nextgen/anaconda/lib/python3.6/site-packages/bcbio/pipeline/main.py", line 91, in _run_toplevel

for xs in pipeline(config, run_info_yaml, parallel, dirs, samples):


 "/usr/local/share/bcbio-nextgen/anaconda/lib/python3.6/site-packages/bcbio/pipeline/main.py", line 294, in fastrnaseqpipeline

samples = rnaseq.combine_files(samples)


 "/usr/local/share/bcbio-nextgen/anaconda/lib/python3.6/site-packages/bcbio/pipeline/rnaseq.py", line 482, in combine_files

tximport = load_tximport(data)


 "/usr/local/share/bcbio-nextgen/anaconda/lib/python3.6/site-packages/bcbio/pipeline/rnaseq.py", line 549, in load_tximport

do.run([rcmd, "--vanilla", "-e", render_string], f"Loading tximport.")


 "/usr/local/share/bcbio-nextgen/anaconda/lib/python3.6/site-packages/bcbio/provenance/do.py", line 26, in run

_do_run(cmd, checks, log_stdout, env=env)


 "/usr/local/share/bcbio-nextgen/anaconda/lib/python3.6/site-packages/bcbio/provenance/do.py", line 106, in _do_run

raise subprocess.CalledProcessError(exitcode, error_msg)
subprocess.CalledProcessError: Command '/usr/local/share/bcbio-nextgen/anaconda/bin/Rscript --vanilla -e library(tidyverse);salmon_files = list.files("/tmp/bcbio-nextgen-1.2.3/tests/test_automated_output/salmon", pattern="quant.sf", recursive=TRUE, full.names=TRUE);tx2gene = readr::read_csv("/tmp/bcbio-nextgen-1.2.3/tests/test_automated_output/inputs/transcriptome/tx2gene.csv", col_names=c("transcript", "gene")); samples = basename(dirname(salmon_files));names(salmon_files) = samples;txi = tximport::tximport(salmon_files, type="salmon", tx2gene=tx2gene, countsFromAbundance="lengthScaledTPM");readr::write_csv(txi$counts %>% as.data.frame() %>% tibble::rownames_to_column("gene"), "/tmp/bcbio-nextgen-1.2.3/tests/test_automated_output/bcbiotx/tmp1sppdsm9/tximport-counts.csv");readr::write_csv(txi$abundance %>% as.data.frame() %>% tibble::rownames_to_column("gene"), "/tmp/bcbio-nextgen-1.2.3/tests/test_automated_output/bcbiotx/tmp3lnwuolk/tximport-tpm.csv");

Traceback (most recent call last):


 "/home/sketcher/anaconda3/envs/OpAI-env/lib/python3.7/runpy.py", line 193, in _run_module_as_main

"__main__", mod_spec)


 "/home/sketcher/anaconda3/envs/OpAI-env/lib/python3.7/runpy.py", line 85, in _run_code

exec(code, run_globals)


 "/home/sketcher/MachineLearning/DRL/OpenAI/spinningup/spinup/run.py", line 230, in <module>

parse_and_execute_grid_search(cmd, args)


 "/home/sketcher/MachineLearning/DRL/OpenAI/spinningup/spinup/run.py", line 162, in parse_and_execute_grid_search

eg.run(algo, **run_kwargs)


 "/home/sketcher/MachineLearning/DRL/OpenAI/spinningup/spinup/utils/run_utils.py", line 546, in run

data_dir=data_dir, datestamp=datestamp, **var)


 "/home/sketcher/MachineLearning/DRL/OpenAI/spinningup/spinup/utils/run_utils.py", line 171, in call_experiment

subprocess.check_call(cmd, env=os.environ)


 "/home/sketcher/anaconda3/envs/OpAI-env/lib/python3.7/subprocess.py", line 347, in check_call

raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/home/sketcher/anaconda3/envs/OpAI-env/bin/python', '/home/sketcher/MachineLearning/DRL/OpenAI/spinningup/spinup/utils/run_entrypoint.py', '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']' returned non-zero exit status 1.
