Traceback (most recent call last):

 "/home/mlima/.autojump/bin/autojump", line 420, in <module>
sys.exit(main(parse_arguments()))

 "/home/mlima/.autojump/bin/autojump", line 386, in main
entries = entriefy(load(config))

 "/home/mlima/.autojump/bin/autojump_data.py", line 82, in load
ifilter(correct_length, imap(parse, f))))

 "/home/mlima/.autojump/bin/autojump_data.py", line 72, in <lambda>
tupleize = lambda x: (x[1], float(x[0]))UnicodeEncodeError: 'decimal' codec can't encode character u'\x00' in position 3: invalid decimal Unicode string
Traceback (most recent call last):


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/bin/bcbio_nextgen.py", line 245, in <module>

main(**kwargs)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/bin/bcbio_nextgen.py", line 46, in main

run_main(**kwargs)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/pipeline/main.py", line 50, in run_main

fc_dir, run_info_yaml)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/pipeline/main.py", line 91, in _run_toplevel

for xs in pipeline(config, run_info_yaml, parallel, dirs, samples):


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/pipeline/main.py", line 138, in variant2pipeline

samples = run_parallel("postprocess_alignment", samples)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/distributed/multi.py", line 28, in run_parallel

return run_multicore(fn, items, config, parallel=parallel)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/distributed/multi.py", line 86, in run_multicore

for data in joblib.Parallel(parallel["num_jobs"], batch_size=1, backend="multiprocessing")(joblib.delayed(fn)(*x) for x in items):


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/joblib/parallel.py", line 1003, in __call__

if self.dispatch_one_batch(iterator):


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/joblib/parallel.py", line 834, in dispatch_one_batch

self._dispatch(tasks)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/joblib/parallel.py", line 753, in _dispatch

job = self._backend.apply_async(batch, callback=cb)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/joblib/_parallel_backends.py", line 201, in apply_async

result = ImmediateResult(func)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/joblib/_parallel_backends.py", line 582, in __init__

self.results = batch()


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/joblib/parallel.py", line 256, in __call__

for func, args, kwargs in self.items]


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/joblib/parallel.py", line 256, in <listcomp>

for func, args, kwargs in self.items]


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/utils.py", line 55, in wrapper

return f(*args, **kwargs)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/distributed/multitasks.py", line 153, in postprocess_alignment

return sample.postprocess_alignment(*args)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/pipeline/sample.py", line 256, in postprocess_alignment

covinfo = callable.sample_callable_bed(bam_file_ready, ref_file, data)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/bam/callable.py", line 45, in sample_callable_bed

callable_bed, depth_files = coverage.calculate(bam_file, data, sv_bed)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/variation/coverage.py", line 100, in calculate

per_base=per_base)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/variation/coverage.py", line 238, in run_mosdepth

do.run(cmd.format(**locals()), message.format(**locals()))


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/provenance/do.py", line 26, in run

_do_run(cmd, checks, log_stdout, env=env)


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/lib/python3.6/site-packages/bcbio/provenance/do.py", line 106, in _do_run

raise subprocess.CalledProcessError(exitcode, error_msg)
subprocess.CalledProcessError: Command 'set -o pipefail; export MOSDEPTH_Q0=NO_COVERAGE && export MOSDEPTH_Q1=LOW_COVERAGE && export MOSDEPTH_Q2=CALLABLE && mosdepth -t 19 -F 1804 -Q 1 --no-per-base --by /media/kokyriakidis/REDPRO/work/coverage/KONSTANTINOS/target-genome.bed --quantize 0:1:4: /media/kokyriakidis/REDPRO/work/bcbiotx/tmprpr0rwyo/KONSTANTINOS-variant_regions /media/kokyriakidis/REDPRO/work/align/KONSTANTINOS/KONSTANTINOS-sort.bam 
