Traceback (most recent call last):

 "/cellar/users/mhofree/projects/cancer_ngs/external/bcbio-nextgen/anaconda/lib/python2.7/site-packages/bcbio/provenance/do.py", line 23, in run
_do_run(cmd, checks, log_stdout)

 "/cellar/users/mhofree/projects/cancer_ngs/external/bcbio-nextgen/anaconda/lib/python2.7/site-packages/bcbio/provenance/do.py", line 117, in _do_run
raise subprocess.CalledProcessError(exitcode, error_msg)CalledProcessError: Command 'java -Xms750m -Xmx2500m -jar /cellar/users/mhofree/projects/cancer_ngs/external/extra-tools/picard-tools-1.108/ReorderSam.jar INPUT=/cellar/users/mhofree/projects/cancer_ngs/results/2014_02_02_ngs_node1/ramdrive/TCGA-CQ-5330/inputData/0a2f92be-8565-40a6-b377-2107b78af047/C495.TCGA-CQ-5330-10A-01D-1683-08.2.bam OUTPUT=/mnt/tmp/TCGA-CQ-5330/work_norealign/bamclean/TCGA-CQ-5330-10A-01D-1683-08/tx/tmpM6Mu1O/C495.TCGA-CQ-5330-10A-01D-1683-08.2-reorder.bam REFERENCE=/cellar/users/mhofree/projects/cancer_ngs/external/bcbio-nextgen/genomes/Hsapiens/hg19/seq/hg19.fa ALLOW_INCOMPLETE_DICT_CONCORDANCE=true TMP_DIR=/mnt/tmp/TCGA-CQ-5330/work_norealign/tmp/tmp4tC8f2 VALIDATION_STRINGENCY=SILENT
Traceback (most recent call last):


 "zero.py", line 17, in <module>

hfile["ds"].read_direct(dsread)
# division by zero


 "/usr/lib/python3.6/site-packages/h5py/_hl/dataset.py", line 654, in read_direct

for mspace in dest_sel.broadcast(source_sel.mshape):


 "/usr/lib/python3.6/site-packages/h5py/_hl/selections.py", line 303, in broadcast

chunks = tuple(x//y for x, y in zip(count, tshape))


 "/usr/lib/python3.6/site-packages/h5py/_hl/selections.py", line 303, in <genexpr>

chunks = tuple(x//y for x, y in zip(count, tshape))
ZeroDivisionError: integer division or modulo by zero
