Traceback (most recent call last):

 "/usr/local/lib/python2.7/dist-packages/gunicorn/arbiter.py", line 507, in spawn_worker
worker.init_process()

 "/usr/local/lib/python2.7/dist-packages/gunicorn/workers/ggevent.py", line 193, in init_process
super(GeventWorker, self).init_process()

 "/usr/local/lib/python2.7/dist-packages/gunicorn/workers/base.py", line 114, in init_process
self.wsgi = self.app.wsgi()

 "/usr/local/lib/python2.7/dist-packages/gunicorn/app/base.py", line 66, in wsgi
self.callable = self.load()

 "/usr/local/lib/python2.7/dist-packages/gunicorn/app/wsgiapp.py", line 65, in load
return self.load_wsgiapp()

 "/usr/local/lib/python2.7/dist-packages/gunicorn/app/wsgiapp.py", line 52, in load_wsgiapp
return util.import_app(self.app_uri)

 "/usr/local/lib/python2.7/dist-packages/gunicorn/util.py", line 356, in import_app
__import__(module)

 "/usr/local/lib/python2.7/dist-packages/docker_registry/wsgi.py", line 28, in <module>
from .search import *
# noqa

 "/usr/local/lib/python2.7/dist-packages/docker_registry/search.py", line 14, in <module>
INDEX = index.load(cfg.search_backend.lower())

 "/usr/local/lib/python2.7/dist-packages/docker_registry/lib/index/__init__.py", line 82, in load
return db.SQLAlchemyIndex()

 "/usr/local/lib/python2.7/dist-packages/docker_registry/lib/index/db.py", line 86, in __init__
self._setup_database()

 "/usr/local/lib/python2.7/dist-packages/docker_registry/toolkit.py", line 353, in wrapper
os.remove(lock_path)OSError: [Errno 2] No such file or directory: './registry._setup_database.lock'
Traceback (most recent call last):
  
 "/apps1/local/share/bcbio/anaconda/lib/python3.6/site-packages/bcbio/provenance/do.py", line 26, in run
    _do_run(cmd, checks, log_stdout, env=env)
  
 "/apps1/local/share/bcbio/anaconda/lib/python3.6/site-packages/bcbio/provenance/do.py", line 106, in _do_run
    raise subprocess.CalledProcessError(exitcode, error_msg)
subprocess.CalledProcessError: Command '/apps1/local/share/bcbio/anaconda/envs/r36/bin/Rscript --vanilla -e library(tidyverse);salmon_files = list.files("/apps2/data/K008-K0011_Target_Discovery/K0008-K0011_RNA_updated/work/salmon", pattern="quant.sf", recursive=TRUE, full.names=TRUE);tx2gene = readr::read_csv("/apps2/data/K008-K0011_Target_Discovery/K0008-K0011_RNA_updated/work/inputs/transcriptome/tx2gene.csv", col_names=c("transcript", "gene")); samples = basename(dirname(salmon_files));names(salmon_files) = samples;txi = tximport::tximport(salmon_files, type="salmon", tx2gene=tx2gene, countsFromAbundance="lengthScaledTPM", dropInfReps=TRUE);readr::write_csv(round(txi$counts) %>% as.data.frame() %>% tibble::rownames_to_column("gene"), "/apps2/data/K008-K0011_Target_Discovery/K0008-K0011_RNA_updated/work/bcbiotx/tmpyh6_tqvc/tximport-counts.csv");readr::write_csv(txi$abundance %>% as.data.frame() %>% tibble::rownames_to_column("gene"), "/apps2/data/K008-K0011_Target_Discovery/K0008-K0011_RNA_updated/work/bcbiotx/tmp9mjt2ip1/tximport-tpm.csv");
