Traceback (most recent call last):


 "/var/tmp/portage/dev-python/psutil-5.6.7/work/psutil-5.6.7-python2_7/lib/psutil/tests/test_linux.py", line 693, in test_against_lscpu

self.assertEqual(psutil.cpu_count(logical=False), len(core_ids))
AssertionError: 8 != 16

Traceback (most recent call last):

 "/data/t-tcga/esebesty/bcbio/tool/bin/bcbio_nextgen.py", line 226, in <module>
main(**kwargs)

 "/data/t-tcga/esebesty/bcbio/tool/bin/bcbio_nextgen.py", line 43, in main
run_main(**kwargs)

 "/data/t-tcga/esebesty/bcbio/data/anaconda/lib/python2.7/site-packages/bcbio/pipeline/main.py", line 47, in run_main
fc_dir, run_info_yaml)

 "/data/t-tcga/esebesty/bcbio/data/anaconda/lib/python2.7/site-packages/bcbio/pipeline/main.py", line 79, in _run_toplevel
with tx_tmpdir(config) as tmpdir:

 "/data/t-tcga/esebesty/bcbio/data/anaconda/lib/python2.7/contextlib.py", line 17, in __enter__
return self.gen.next()

 "/data/t-tcga/esebesty/bcbio/data/anaconda/lib/python2.7/site-packages/bcbio/distributed/transaction.py", line 39, in tx_tmpdir
config_tmpdir = utils.safe_makedir(os.path.expandvars(config_tmpdir))

 "/data/t-tcga/esebesty/bcbio/data/anaconda/lib/python2.7/site-packages/bcbio/utils.py", line 183, in safe_makedir
os.makedirs(dname)

 "/data/t-tcga/esebesty/bcbio/data/anaconda/lib/python2.7/os.py", line 157, in makedirs
mkdir(name, mode)OSError: [Errno 13] Permission denied: '/scratch'