θɹuːˈaʊt ðə nˈaɪntiːnhˈʌndɹɪd nˈaɪnti z, ðɪ ˈɑːkjʊpˌaɪɪŋ ɪndoʊnˈiːʒən fˈoːɹsᵻz stˈɛpt ˌʌp ðɛɹ ˈækʃənz ɐɡˈɛnst ðə ɹᵻsˈɪstəns, ænd fˈækʃənəl tɹˈʌbəlz bᵻtwˌiːn fɹˈɛɾɪlˌɪn ænd ˈʌðɚ ɹᵻsˈɪstəns ˌɔːɹɡɐnᵻzˈeɪʃənz plˈeɪɡd ðə sˌiːˌɛnˌɑːɹɹˈɛm, wɪð fɹˈɛɾɪlˌɪn mˈɛmbɚz sˈaɪnɪŋ ɐ dˈɑːkjuːmənt ɐɡˈɛnst ðə lˈiːdɚʃˌɪp ʌv sæntˈɑːnə.
Throughout the 1990s, the occupying Indonesian forces stepped up their actions against the resistance, and factional troubles between Fretilin and other resistance organizations plagued the CNRM, with Fretilin members signing a document against the leadership of Santana.