def delete_submission(self, submission_id):
        """Deletes a Clinvar submission object, along with all associated clinvar objects (variants and casedata)

            Args:
                submission_id(str): the ID of the submission to be deleted

            Returns:
                deleted_objects(int): the number of associated objects removed (variants and/or casedata)
                deleted_submissions(int): 1 if it's deleted, 0 if something went wrong
        """
        LOG.info("Deleting clinvar submission %s", submission_id)
        submission_obj = self.clinvar_submission_collection.find_one({ '_id' : ObjectId(submission_id)})

        submission_variants = submission_obj.get('variant_data')
        submission_casedata = submission_obj.get('case_data')

        submission_objects = []

        if submission_variants and submission_casedata:
            submission_objects = submission_variants + submission_casedata
        elif submission_variants:
            submission_objects = submission_variants
        elif submission_casedata:
            submission_objects = submission_casedata

        # Delete all variants and casedata objects associated with this submission
        result = self.clinvar_collection.delete_many({'_id': { "$in": submission_objects} })
        deleted_objects = result.deleted_count

        # Delete the submission itself
        result = self.clinvar_submission_collection.delete_one({'_id': ObjectId(submission_id)})
        deleted_submissions = result.deleted_count

        #return deleted_count, deleted_submissions
        return deleted_objects,deleted_submissions
def delete_submission(self, submission_id):
        """Deletes a Clinvar submission object, along with all associated clinvar objects (variants and casedata)

            Args:
                submission_id(str): the ID of the submission to be deleted

            Returns:
                deleted_objects(int): the number of associated objects removed (variants and/or casedata)
                deleted_submissions(int): 1 if it's deleted, 0 if something went wrong
        """
        LOG.info("Deleting clinvar submission %s", submission_id)
        submission_obj = self.clinvar_submission_collection.find_one({ '_id' : ObjectId(submission_id)})

        submission_variants = submission_obj.get('variant_data')
        submission_casedata = submission_obj.get('case_data')

        submission_objects = []

        if submission_variants and submission_casedata:
            submission_objects = submission_variants + submission_casedata
        elif submission_variants:
            submission_objects = submission_variants
        elif submission_casedata:
            submission_objects = submission_casedata

        # Delete all variants and casedata objects associated with this submission
        result = self.clinvar_collection.delete_many({'_id': { "$in": submission_objects} })
        deleted_objects = result.deleted_count

        # Delete the submission itself
        result = self.clinvar_submission_collection.delete_one({'_id': ObjectId(submission_id)})
        deleted_submissions = result.deleted_count

        #return deleted_count, deleted_submissions
        return deleted_objects,deleted_submissions
def delete_submission ( self , submission_id ) : LOG . info ( "Deleting clinvar submission %s" , submission_id ) submission_obj = self . clinvar_submission_collection . find_one ( { '_id' : ObjectId ( submission_id ) } ) submission_variants = submission_obj . get ( 'variant_data' ) submission_casedata = submission_obj . get ( 'case_data' ) submission_objects = [ ] if submission_variants and submission_casedata : submission_objects = submission_variants + submission_casedata elif submission_variants : submission_objects = submission_variants elif submission_casedata : submission_objects = submission_casedata # Delete all variants and casedata objects associated with this submission result = self . clinvar_collection . delete_many ( { '_id' : { "$in" : submission_objects } } ) deleted_objects = result . deleted_count # Delete the submission itself result = self . clinvar_submission_collection . delete_one ( { '_id' : ObjectId ( submission_id ) } ) deleted_submissions = result . deleted_count #return deleted_count, deleted_submissions return deleted_objects , deleted_submissions
Deletes a Clinvar submission object, along with all associated clinvar objects (variants and casedata)

            Args:
                submission_id(str): the ID of the submission to be deleted

            Returns:
                deleted_objects(int): the number of associated objects removed (variants and/or casedata)
                deleted_submissions(int): 1 if it's deleted, 0 if something went wrong
Deletes a Clinvar submission object along with all associated clinvar objects ( variants and casedata )