Patch the Thor::Actions run task to use Mixlib::ShellOut with support for passing STDIN
user
```ruby
require 'mixlib/shellout'
require 'thor/actions'

class Thor
  ##
  # Patch `run` to use Mixlib::Shellout and accept STDIN
  ##
  module Actions
    RUN_OPTIONS = %w(cwd domain password user group umask timeout returns
                     live_stream live_stdout live_stderr input logger log_level
                     log_tag environment env login)

    def run(command, config = {})
      return unless behavior == :invoke

      destination = relative_to_original_destination_root(destination_root, false)
      desc = "#{command} from #{destination.inspect}"

      if config[:with]
        desc = "#{File.basename(config[:with].to_s)} #{desc}"
        command = "#{config[:with]} #{command}"
      end

      say_status :run, desc, config.fetch(:verbose, true)
      return if options[:pretend]

      shell_options = config.select { |k, _| RUN_OPTIONS.include?(k.to_s) }
      shell_options[:live_stdout] = STDOUT

      Mixlib::ShellOut.new(command, shell_options).run_command
    end
  end
end
```
assistant