Fagen's third solo album, Morph the Cat, was released on March 14, 2006, and featured Wayne Krantz (guitar), Jon Herington (guitar), Keith Carlock (drums), Freddie Washington (bass), Ted Baker (piano), and Walt Weiskopf (sax).
In 2012, Fagen toured with the the Dukes of September, featuring Michael McDonald and Boz Scaggs.