Update README.md
Browse files
README.md
CHANGED
@@ -11,4 +11,32 @@ tags:
|
|
11 |
pretty_name: MoleculeNet FreeSolv
|
12 |
size_categories:
|
13 |
- n<1K
|
14 |
-
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
11 |
pretty_name: MoleculeNet FreeSolv
|
12 |
size_categories:
|
13 |
- n<1K
|
14 |
+
---
|
15 |
+
|
16 |
+
# MoleculeNet FreeSolv
|
17 |
+
|
18 |
+
FreeSolv (Free Solvation Database) dataset [[1]](#1), part of MoleculeNet [[2]](#2) benchmark. It is intended to be used through
|
19 |
+
[scikit-fingerprints](https://github.com/scikit-fingerprints/scikit-fingerprints) library.
|
20 |
+
|
21 |
+
The task is to predict hydration free energy of small molecules in water. Targets are in kcal/mol.
|
22 |
+
|
23 |
+
| **Characteristic** | **Description** |
|
24 |
+
|:------------------:|:---------------:|
|
25 |
+
| Tasks | 1 |
|
26 |
+
| Task type | regression |
|
27 |
+
| Total samples | 642 |
|
28 |
+
| Recommended split | scaffold |
|
29 |
+
| Recommended metric | RMSE |
|
30 |
+
|
31 |
+
## References
|
32 |
+
<a id="1">[1]</a>
|
33 |
+
Mobley, D.L., Guthrie, J.P.
|
34 |
+
"FreeSolv: a database of experimental and calculated hydration free energies, with input files"
|
35 |
+
J Comput Aided Mol Des 28, 711–720 (2014)
|
36 |
+
https://link.springer.com/article/10.1007/s10822-014-9747-x
|
37 |
+
|
38 |
+
<a id="2">[2]</a>
|
39 |
+
Wu, Zhenqin, et al.
|
40 |
+
"MoleculeNet: a benchmark for molecular machine learning."
|
41 |
+
Chemical Science 9.2 (2018): 513-530
|
42 |
+
https://pubs.rsc.org/en/content/articlelanding/2018/sc/c7sc02664a
|