prompt: We are currently solving the following issue within our repository. Here is the issue text:
  --- BEGIN ISSUE ---
  Archive Serializers use `id` rather than `pk`
  Some of our serializers use `id` rather than `pk`, for consistency we should only use one and that should be `pk`. Check the other serializers and see if this occurs elsewhere.
  
  --- END ISSUE ---
  
  Below are some code segments, each from a relevant file. One or more of these files may contain bugs.
  --- BEGIN FILES ---
  Path: `app/grandchallenge/archives/serializers.py`
  Content:
  ```
  1 from django.db.transaction import on_commit
  2 from guardian.shortcuts import get_objects_for_user
  3 from rest_framework import serializers
  4 from rest_framework.fields import ReadOnlyField, URLField
  5 from rest_framework.relations import HyperlinkedRelatedField
  6 
  7 from grandchallenge.archives.models import Archive, ArchiveItem
  8 from grandchallenge.archives.tasks import (
  9     start_archive_item_update_tasks,
  10     update_archive_item_update_kwargs,
  11 )
  12 from grandchallenge.components.serializers import (
  13     ComponentInterfaceValuePostSerializer,
  14     ComponentInterfaceValueSerializer,
  15 )
  16 from grandchallenge.hanging_protocols.serializers import (
  17     HangingProtocolSerializer,
  18 )
  19 
  20 
  21 class ArchiveItemSerializer(serializers.ModelSerializer):
  22     archive = HyperlinkedRelatedField(
  23         read_only=True, view_name="api:archive-detail"
  24     )
  25     values = ComponentInterfaceValueSerializer(many=True)
  26 
  27     class Meta:
  28         model = ArchiveItem
  29         fields = ("id", "archive", "values")
  30 
  31 
  32 class ArchiveSerializer(serializers.ModelSerializer):
  33     algorithms = HyperlinkedRelatedField(
  34         read_only=True, many=True, view_name="api:algorithm-detail"
  35     )
  36     logo = URLField(source="logo.x20.url", read_only=True)
  37     url = URLField(source="get_absolute_url", read_only=True)
  38     # Include the read only name for legacy clients
  39     name = ReadOnlyField()
  40     hanging_protocol = HangingProtocolSerializer()
  41 
  42     class Meta:
  43         model = Archive
  44         fields = (
  45             "id",
  46             "name",
  47             "title",
  48             "algorithms",
  49             "logo",
  50             "description",
  51             "api_url",
  52             "url",
  53             "hanging_protocol",
  54             "view_content",
  55         )
  56 
  57 
  58 class ArchiveItemPostSerializer(ArchiveItemSerializer):
  59     archive = HyperlinkedRelatedField(
  60         queryset=Archive.objects.none(),
  61         view_name="api:archive-detail",
  62         write_only=True,
  63     )
  64 
  65     def __init__(self, *args, **kwargs):
  66         super().__init__(*args, **kwargs)
  67         self.fields["values"] = ComponentInterfaceValuePostSerializer(
  68             many=True, context=self.context
  69         )
  70 
  71         if "request" in self.context:
  72             user = self.context["request"].user
  73 
  74             self.fields["archive"].queryset = get_objects_for_user(
  75                 user, "archives.use_archive", accept_global_perms=False
  76             )
  77 
  78     def update(self, instance, validated_data):
  79         civs = validated_data.pop("values")
  80 
  81         civ_pks_to_remove = set()
  82         civ_pks_to_add = set()
  83         upload_pks = {}
  84 
  85         for civ in civs:
  86             interface = civ.pop("interface", None)
  87             upload_session = civ.pop("upload_session", None)
  88             value = civ.pop("value", None)
  89             image = civ.pop("image", None)
  90             user_upload = civ.pop("user_upload", None)
  91 
  92             update_archive_item_update_kwargs(
  93                 instance=instance,
  94                 interface=interface,
  95                 value=value,
  96                 image=image,
  97                 user_upload=user_upload,
  98                 upload_session=upload_session,
  99                 civ_pks_to_add=civ_pks_to_add,
  100                 civ_pks_to_remove=civ_pks_to_remove,
  101                 upload_pks=upload_pks,
  102             )
  103 
  104         on_commit(
  105             start_archive_item_update_tasks.signature(
  106                 kwargs={
  107                     "archive_item_pk": instance.pk,
  108                     "civ_pks_to_add": list(civ_pks_to_add),
  109                     "civ_pks_to_remove": list(civ_pks_to_remove),
  110                     "upload_pks": upload_pks,
  111                 }
  112             ).apply_async
  113         )
  114 
  115         return instance
  116
  ```
  --- END FILES ---
  
  Please first localize the bug based on the issue statement, and then generate a patch according to the `git diff` format fenced by three backticks.
  
  Here is an example:
  
  ```diff
  diff --git a/examples/server_async.py b/examples/server_async.py
  --- a/examples/server_async.py
  +++ b/examples/server_async.py
  @@ -313,4 +313,4 @@
   
   
   if __name__ == "__main__":
  -    asyncio.run(run_async_server("."), debug=True)
  +    asyncio.run(run_async_server(), debug=True)
  diff --git a/examples/server_sync.py b/examples/server_sync.py
  --- a/examples/server_sync.py
  +++ b/examples/server_sync.py
  @@ -313,5 +313,5 @@
   
   
   if __name__ == "__main__":
  -    server = run_sync_server(".")
  +    server = run_sync_server()
       server.shutdown()
  
  ```
  
golden_diff: diff --git a/app/grandchallenge/archives/serializers.py b/app/grandchallenge/archives/serializers.py
  --- a/app/grandchallenge/archives/serializers.py
  +++ b/app/grandchallenge/archives/serializers.py
  @@ -11,7 +11,7 @@
   )
   from grandchallenge.components.serializers import (
       ComponentInterfaceValuePostSerializer,
  -    ComponentInterfaceValueSerializer,
  +    HyperlinkedComponentInterfaceValueSerializer,
   )
   from grandchallenge.hanging_protocols.serializers import (
       HangingProtocolSerializer,
  @@ -22,11 +22,11 @@
       archive = HyperlinkedRelatedField(
           read_only=True, view_name="api:archive-detail"
       )
  -    values = ComponentInterfaceValueSerializer(many=True)
  +    values = HyperlinkedComponentInterfaceValueSerializer(many=True)
   
       class Meta:
           model = ArchiveItem
  -        fields = ("id", "archive", "values")
  +        fields = ("pk", "archive", "values")
   
   
   class ArchiveSerializer(serializers.ModelSerializer):
  @@ -42,7 +42,7 @@
       class Meta:
           model = Archive
           fields = (
  -            "id",
  +            "pk",
               "name",
               "title",
               "algorithms",
  
verification_info: {"golden_diff": "diff --git a/app/grandchallenge/archives/serializers.py b/app/grandchallenge/archives/serializers.py\n--- a/app/grandchallenge/archives/serializers.py\n+++ b/app/grandchallenge/archives/serializers.py\n@@ -11,7 +11,7 @@\n )\n from grandchallenge.components.serializers import (\n     ComponentInterfaceValuePostSerializer,\n-    ComponentInterfaceValueSerializer,\n+    HyperlinkedComponentInterfaceValueSerializer,\n )\n from grandchallenge.hanging_protocols.serializers import (\n     HangingProtocolSerializer,\n@@ -22,11 +22,11 @@\n     archive = HyperlinkedRelatedField(\n         read_only=True, view_name=\"api:archive-detail\"\n     )\n-    values = ComponentInterfaceValueSerializer(many=True)\n+    values = HyperlinkedComponentInterfaceValueSerializer(many=True)\n \n     class Meta:\n         model = ArchiveItem\n-        fields = (\"id\", \"archive\", \"values\")\n+        fields = (\"pk\", \"archive\", \"values\")\n \n \n class ArchiveSerializer(serializers.ModelSerializer):\n@@ -42,7 +42,7 @@\n     class Meta:\n         model = Archive\n         fields = (\n-            \"id\",\n+            \"pk\",\n             \"name\",\n             \"title\",\n             \"algorithms\",\n", "issue": "Archive Serializers use `id` rather than `pk`\nSome of our serializers use `id` rather than `pk`, for consistency we should only use one and that should be `pk`. Check the other serializers and see if this occurs elsewhere.\n", "before_files": [{"content": "from django.db.transaction import on_commit\nfrom guardian.shortcuts import get_objects_for_user\nfrom rest_framework import serializers\nfrom rest_framework.fields import ReadOnlyField, URLField\nfrom rest_framework.relations import HyperlinkedRelatedField\n\nfrom grandchallenge.archives.models import Archive, ArchiveItem\nfrom grandchallenge.archives.tasks import (\n    start_archive_item_update_tasks,\n    update_archive_item_update_kwargs,\n)\nfrom grandchallenge.components.serializers import (\n    ComponentInterfaceValuePostSerializer,\n    ComponentInterfaceValueSerializer,\n)\nfrom grandchallenge.hanging_protocols.serializers import (\n    HangingProtocolSerializer,\n)\n\n\nclass ArchiveItemSerializer(serializers.ModelSerializer):\n    archive = HyperlinkedRelatedField(\n        read_only=True, view_name=\"api:archive-detail\"\n    )\n    values = ComponentInterfaceValueSerializer(many=True)\n\n    class Meta:\n        model = ArchiveItem\n        fields = (\"id\", \"archive\", \"values\")\n\n\nclass ArchiveSerializer(serializers.ModelSerializer):\n    algorithms = HyperlinkedRelatedField(\n        read_only=True, many=True, view_name=\"api:algorithm-detail\"\n    )\n    logo = URLField(source=\"logo.x20.url\", read_only=True)\n    url = URLField(source=\"get_absolute_url\", read_only=True)\n    # Include the read only name for legacy clients\n    name = ReadOnlyField()\n    hanging_protocol = HangingProtocolSerializer()\n\n    class Meta:\n        model = Archive\n        fields = (\n            \"id\",\n            \"name\",\n            \"title\",\n            \"algorithms\",\n            \"logo\",\n            \"description\",\n            \"api_url\",\n            \"url\",\n            \"hanging_protocol\",\n            \"view_content\",\n        )\n\n\nclass ArchiveItemPostSerializer(ArchiveItemSerializer):\n    archive = HyperlinkedRelatedField(\n        queryset=Archive.objects.none(),\n        view_name=\"api:archive-detail\",\n        write_only=True,\n    )\n\n    def __init__(self, *args, **kwargs):\n        super().__init__(*args, **kwargs)\n        self.fields[\"values\"] = ComponentInterfaceValuePostSerializer(\n            many=True, context=self.context\n        )\n\n        if \"request\" in self.context:\n            user = self.context[\"request\"].user\n\n            self.fields[\"archive\"].queryset = get_objects_for_user(\n                user, \"archives.use_archive\", accept_global_perms=False\n            )\n\n    def update(self, instance, validated_data):\n        civs = validated_data.pop(\"values\")\n\n        civ_pks_to_remove = set()\n        civ_pks_to_add = set()\n        upload_pks = {}\n\n        for civ in civs:\n            interface = civ.pop(\"interface\", None)\n            upload_session = civ.pop(\"upload_session\", None)\n            value = civ.pop(\"value\", None)\n            image = civ.pop(\"image\", None)\n            user_upload = civ.pop(\"user_upload\", None)\n\n            update_archive_item_update_kwargs(\n                instance=instance,\n                interface=interface,\n                value=value,\n                image=image,\n                user_upload=user_upload,\n                upload_session=upload_session,\n                civ_pks_to_add=civ_pks_to_add,\n                civ_pks_to_remove=civ_pks_to_remove,\n                upload_pks=upload_pks,\n            )\n\n        on_commit(\n            start_archive_item_update_tasks.signature(\n                kwargs={\n                    \"archive_item_pk\": instance.pk,\n                    \"civ_pks_to_add\": list(civ_pks_to_add),\n                    \"civ_pks_to_remove\": list(civ_pks_to_remove),\n                    \"upload_pks\": upload_pks,\n                }\n            ).apply_async\n        )\n\n        return instance\n", "path": "app/grandchallenge/archives/serializers.py"}], "after_files": [{"content": "from django.db.transaction import on_commit\nfrom guardian.shortcuts import get_objects_for_user\nfrom rest_framework import serializers\nfrom rest_framework.fields import ReadOnlyField, URLField\nfrom rest_framework.relations import HyperlinkedRelatedField\n\nfrom grandchallenge.archives.models import Archive, ArchiveItem\nfrom grandchallenge.archives.tasks import (\n    start_archive_item_update_tasks,\n    update_archive_item_update_kwargs,\n)\nfrom grandchallenge.components.serializers import (\n    ComponentInterfaceValuePostSerializer,\n    HyperlinkedComponentInterfaceValueSerializer,\n)\nfrom grandchallenge.hanging_protocols.serializers import (\n    HangingProtocolSerializer,\n)\n\n\nclass ArchiveItemSerializer(serializers.ModelSerializer):\n    archive = HyperlinkedRelatedField(\n        read_only=True, view_name=\"api:archive-detail\"\n    )\n    values = HyperlinkedComponentInterfaceValueSerializer(many=True)\n\n    class Meta:\n        model = ArchiveItem\n        fields = (\"pk\", \"archive\", \"values\")\n\n\nclass ArchiveSerializer(serializers.ModelSerializer):\n    algorithms = HyperlinkedRelatedField(\n        read_only=True, many=True, view_name=\"api:algorithm-detail\"\n    )\n    logo = URLField(source=\"logo.x20.url\", read_only=True)\n    url = URLField(source=\"get_absolute_url\", read_only=True)\n    # Include the read only name for legacy clients\n    name = ReadOnlyField()\n    hanging_protocol = HangingProtocolSerializer()\n\n    class Meta:\n        model = Archive\n        fields = (\n            \"pk\",\n            \"name\",\n            \"title\",\n            \"algorithms\",\n            \"logo\",\n            \"description\",\n            \"api_url\",\n            \"url\",\n            \"hanging_protocol\",\n            \"view_content\",\n        )\n\n\nclass ArchiveItemPostSerializer(ArchiveItemSerializer):\n    archive = HyperlinkedRelatedField(\n        queryset=Archive.objects.none(),\n        view_name=\"api:archive-detail\",\n        write_only=True,\n    )\n\n    def __init__(self, *args, **kwargs):\n        super().__init__(*args, **kwargs)\n        self.fields[\"values\"] = ComponentInterfaceValuePostSerializer(\n            many=True, context=self.context\n        )\n\n        if \"request\" in self.context:\n            user = self.context[\"request\"].user\n\n            self.fields[\"archive\"].queryset = get_objects_for_user(\n                user, \"archives.use_archive\", accept_global_perms=False\n            )\n\n    def update(self, instance, validated_data):\n        civs = validated_data.pop(\"values\")\n\n        civ_pks_to_remove = set()\n        civ_pks_to_add = set()\n        upload_pks = {}\n\n        for civ in civs:\n            interface = civ.pop(\"interface\", None)\n            upload_session = civ.pop(\"upload_session\", None)\n            value = civ.pop(\"value\", None)\n            image = civ.pop(\"image\", None)\n            user_upload = civ.pop(\"user_upload\", None)\n\n            update_archive_item_update_kwargs(\n                instance=instance,\n                interface=interface,\n                value=value,\n                image=image,\n                user_upload=user_upload,\n                upload_session=upload_session,\n                civ_pks_to_add=civ_pks_to_add,\n                civ_pks_to_remove=civ_pks_to_remove,\n                upload_pks=upload_pks,\n            )\n\n        on_commit(\n            start_archive_item_update_tasks.signature(\n                kwargs={\n                    \"archive_item_pk\": instance.pk,\n                    \"civ_pks_to_add\": list(civ_pks_to_add),\n                    \"civ_pks_to_remove\": list(civ_pks_to_remove),\n                    \"upload_pks\": upload_pks,\n                }\n            ).apply_async\n        )\n\n        return instance\n", "path": "app/grandchallenge/archives/serializers.py"}]}