prompt: We are currently solving the following issue within our repository. Here is the issue text:
  --- BEGIN ISSUE ---
  refactor: Remove dependency on jQuery
  We should replace the `$(...)` with vanilla JS.
  
  --- END ISSUE ---
  
  Below are some code segments, each from a relevant file. One or more of these files may contain bugs.
  --- BEGIN FILES ---
  Path: `setup.py`
  Content:
  ```
  1 #!/usr/bin/env python
  2 import re
  3 import os
  4 import urllib.request
  5 import zipfile
  6 import shutil
  7 
  8 from setuptools import setup, find_packages
  9 from codecs import open
  10 
  11 requires = ["click", "cookiecutter", "networkx", "numpy", "pandas", "tornado", "tqdm"]
  12 
  13 extras_require = {
  14     "dev": ["black", "coverage", "flake8", "pytest >= 4.6", "pytest-cov", "sphinx"],
  15     "docs": ["sphinx", "ipython"],
  16 }
  17 
  18 version = ""
  19 with open("mesa/__init__.py") as fd:
  20     version = re.search(
  21         r'^__version__\s*=\s*[\'"]([^\'"]*)[\'"]', fd.read(), re.MULTILINE
  22     ).group(1)
  23 
  24 with open("README.rst", "rb", encoding="utf-8") as f:
  25     readme = f.read()
  26 
  27 # Ensure JS dependencies are downloaded
  28 external_dir = "mesa/visualization/templates/external"
  29 # We use a different path for single-file JS because some of them are loaded
  30 # the same way as Mesa JS files
  31 external_dir_single = "mesa/visualization/templates/js/external"
  32 # First, ensure that the external directories exists
  33 os.makedirs(external_dir, exist_ok=True)
  34 os.makedirs(external_dir_single, exist_ok=True)
  35 
  36 
  37 def ensure_JS_dep(dirname, url):
  38     dst_path = os.path.join(external_dir, dirname)
  39     if os.path.isdir(dst_path):
  40         # Do nothing if already downloaded
  41         return
  42     print(f"Downloading the {dirname} dependency from the internet...")
  43     zip_file = dirname + ".zip"
  44     urllib.request.urlretrieve(url, zip_file)
  45     with zipfile.ZipFile(zip_file, "r") as zip_ref:
  46         zip_ref.extractall()
  47     shutil.move(dirname, dst_path)
  48     # Cleanup
  49     os.remove(zip_file)
  50     print("Done")
  51 
  52 
  53 def ensure_JS_dep_single(url, out_name=None):
  54     # Used for downloading e.g. jQuery single file
  55     if out_name is None:
  56         out_name = url.split("/")[-1]
  57     dst_path = os.path.join(external_dir_single, out_name)
  58     if os.path.isfile(dst_path):
  59         return
  60     print(f"Downloading the {out_name} dependency from the internet...")
  61     urllib.request.urlretrieve(url, out_name)
  62     shutil.move(out_name, dst_path)
  63 
  64 
  65 # Important: when you update JS dependency version, make sure to also update the
  66 # hardcoded included files and versions in: mesa/visualization/templates/modular_template.html
  67 
  68 # Ensure Bootstrap
  69 bootstrap_version = "5.1.3"
  70 ensure_JS_dep(
  71     f"bootstrap-{bootstrap_version}-dist",
  72     f"https://github.com/twbs/bootstrap/releases/download/v{bootstrap_version}/bootstrap-{bootstrap_version}-dist.zip",
  73 )
  74 
  75 # Ensure Bootstrap Slider
  76 bootstrap_slider_version = "11.0.2"
  77 ensure_JS_dep(
  78     f"bootstrap-slider-{bootstrap_slider_version}",
  79     f"https://github.com/seiyria/bootstrap-slider/archive/refs/tags/v{bootstrap_slider_version}.zip",
  80 )
  81 
  82 jquery_version = "2.2.4"
  83 ensure_JS_dep_single(
  84     f"https://code.jquery.com/jquery-{jquery_version}.min.js",
  85 )
  86 # Important: when updating the D3 version, make sure to update the constant
  87 # D3_JS_FILE in mesa/visualization/ModularVisualization.py.
  88 d3_version = "7.4.3"
  89 ensure_JS_dep_single(
  90     f"https://cdnjs.cloudflare.com/ajax/libs/d3/{d3_version}/d3.min.js",
  91     out_name=f"d3-{d3_version}.min.js",
  92 )
  93 # Important: Make sure to update CHART_JS_FILE in
  94 # mesa/visualization/ModularVisualization.py.
  95 chartjs_version = "3.6.1"
  96 ensure_JS_dep_single(
  97     f"https://cdn.jsdelivr.net/npm/chart.js@{chartjs_version}/dist/chart.min.js",
  98     out_name=f"chart-{chartjs_version}.min.js",
  99 )
  100 
  101 
  102 setup(
  103     name="Mesa",
  104     version=version,
  105     description="Agent-based modeling (ABM) in Python 3+",
  106     long_description=readme,
  107     author="Project Mesa Team",
  108     author_email="projectmesa@googlegroups.com",
  109     url="https://github.com/projectmesa/mesa",
  110     packages=find_packages(),
  111     package_data={
  112         "mesa": [
  113             "visualization/templates/*.html",
  114             "visualization/templates/css/*",
  115             "visualization/templates/js/*",
  116             "visualization/templates/external/**/*",
  117         ],
  118         "cookiecutter-mesa": ["cookiecutter-mesa/*"],
  119     },
  120     include_package_data=True,
  121     install_requires=requires,
  122     extras_require=extras_require,
  123     keywords="agent based modeling model ABM simulation multi-agent",
  124     license="Apache 2.0",
  125     zip_safe=False,
  126     classifiers=[
  127         "Topic :: Scientific/Engineering",
  128         "Topic :: Scientific/Engineering :: Artificial Life",
  129         "Topic :: Scientific/Engineering :: Artificial Intelligence",
  130         "Intended Audience :: Science/Research",
  131         "Programming Language :: Python :: 3 :: Only",
  132         "Programming Language :: Python :: 3.7",
  133         "Programming Language :: Python :: 3.8",
  134         "Programming Language :: Python :: 3.9",
  135         "Programming Language :: Python :: 3.10",
  136         "License :: OSI Approved :: Apache Software License",
  137         "Operating System :: OS Independent",
  138         "Development Status :: 3 - Alpha",
  139         "Natural Language :: English",
  140     ],
  141     entry_points="""
  142         [console_scripts]
  143         mesa=mesa.main:cli
  144     """,
  145     python_requires=">=3.7",
  146 )
  147
  ```
  --- END FILES ---
  
  Please first localize the bug based on the issue statement, and then generate a patch according to the `git diff` format fenced by three backticks.
  
  Here is an example:
  
  ```diff
  diff --git a/examples/server_async.py b/examples/server_async.py
  --- a/examples/server_async.py
  +++ b/examples/server_async.py
  @@ -313,4 +313,4 @@
   
   
   if __name__ == "__main__":
  -    asyncio.run(run_async_server("."), debug=True)
  +    asyncio.run(run_async_server(), debug=True)
  diff --git a/examples/server_sync.py b/examples/server_sync.py
  --- a/examples/server_sync.py
  +++ b/examples/server_sync.py
  @@ -313,5 +313,5 @@
   
   
   if __name__ == "__main__":
  -    server = run_sync_server(".")
  +    server = run_sync_server()
       server.shutdown()
  
  ```
  
golden_diff: diff --git a/setup.py b/setup.py
  --- a/setup.py
  +++ b/setup.py
  @@ -51,7 +51,7 @@
   
   
   def ensure_JS_dep_single(url, out_name=None):
  -    # Used for downloading e.g. jQuery single file
  +    # Used for downloading e.g. D3.js single file
       if out_name is None:
           out_name = url.split("/")[-1]
       dst_path = os.path.join(external_dir_single, out_name)
  @@ -79,10 +79,6 @@
       f"https://github.com/seiyria/bootstrap-slider/archive/refs/tags/v{bootstrap_slider_version}.zip",
   )
   
  -jquery_version = "2.2.4"
  -ensure_JS_dep_single(
  -    f"https://code.jquery.com/jquery-{jquery_version}.min.js",
  -)
   # Important: when updating the D3 version, make sure to update the constant
   # D3_JS_FILE in mesa/visualization/ModularVisualization.py.
   d3_version = "7.4.3"
  
verification_info: {"golden_diff": "diff --git a/setup.py b/setup.py\n--- a/setup.py\n+++ b/setup.py\n@@ -51,7 +51,7 @@\n \n \n def ensure_JS_dep_single(url, out_name=None):\n-    # Used for downloading e.g. jQuery single file\n+    # Used for downloading e.g. D3.js single file\n     if out_name is None:\n         out_name = url.split(\"/\")[-1]\n     dst_path = os.path.join(external_dir_single, out_name)\n@@ -79,10 +79,6 @@\n     f\"https://github.com/seiyria/bootstrap-slider/archive/refs/tags/v{bootstrap_slider_version}.zip\",\n )\n \n-jquery_version = \"2.2.4\"\n-ensure_JS_dep_single(\n-    f\"https://code.jquery.com/jquery-{jquery_version}.min.js\",\n-)\n # Important: when updating the D3 version, make sure to update the constant\n # D3_JS_FILE in mesa/visualization/ModularVisualization.py.\n d3_version = \"7.4.3\"\n", "issue": "refactor: Remove dependency on jQuery\nWe should replace the `$(...)` with vanilla JS.\n", "before_files": [{"content": "#!/usr/bin/env python\nimport re\nimport os\nimport urllib.request\nimport zipfile\nimport shutil\n\nfrom setuptools import setup, find_packages\nfrom codecs import open\n\nrequires = [\"click\", \"cookiecutter\", \"networkx\", \"numpy\", \"pandas\", \"tornado\", \"tqdm\"]\n\nextras_require = {\n    \"dev\": [\"black\", \"coverage\", \"flake8\", \"pytest >= 4.6\", \"pytest-cov\", \"sphinx\"],\n    \"docs\": [\"sphinx\", \"ipython\"],\n}\n\nversion = \"\"\nwith open(\"mesa/__init__.py\") as fd:\n    version = re.search(\n        r'^__version__\\s*=\\s*[\\'\"]([^\\'\"]*)[\\'\"]', fd.read(), re.MULTILINE\n    ).group(1)\n\nwith open(\"README.rst\", \"rb\", encoding=\"utf-8\") as f:\n    readme = f.read()\n\n# Ensure JS dependencies are downloaded\nexternal_dir = \"mesa/visualization/templates/external\"\n# We use a different path for single-file JS because some of them are loaded\n# the same way as Mesa JS files\nexternal_dir_single = \"mesa/visualization/templates/js/external\"\n# First, ensure that the external directories exists\nos.makedirs(external_dir, exist_ok=True)\nos.makedirs(external_dir_single, exist_ok=True)\n\n\ndef ensure_JS_dep(dirname, url):\n    dst_path = os.path.join(external_dir, dirname)\n    if os.path.isdir(dst_path):\n        # Do nothing if already downloaded\n        return\n    print(f\"Downloading the {dirname} dependency from the internet...\")\n    zip_file = dirname + \".zip\"\n    urllib.request.urlretrieve(url, zip_file)\n    with zipfile.ZipFile(zip_file, \"r\") as zip_ref:\n        zip_ref.extractall()\n    shutil.move(dirname, dst_path)\n    # Cleanup\n    os.remove(zip_file)\n    print(\"Done\")\n\n\ndef ensure_JS_dep_single(url, out_name=None):\n    # Used for downloading e.g. jQuery single file\n    if out_name is None:\n        out_name = url.split(\"/\")[-1]\n    dst_path = os.path.join(external_dir_single, out_name)\n    if os.path.isfile(dst_path):\n        return\n    print(f\"Downloading the {out_name} dependency from the internet...\")\n    urllib.request.urlretrieve(url, out_name)\n    shutil.move(out_name, dst_path)\n\n\n# Important: when you update JS dependency version, make sure to also update the\n# hardcoded included files and versions in: mesa/visualization/templates/modular_template.html\n\n# Ensure Bootstrap\nbootstrap_version = \"5.1.3\"\nensure_JS_dep(\n    f\"bootstrap-{bootstrap_version}-dist\",\n    f\"https://github.com/twbs/bootstrap/releases/download/v{bootstrap_version}/bootstrap-{bootstrap_version}-dist.zip\",\n)\n\n# Ensure Bootstrap Slider\nbootstrap_slider_version = \"11.0.2\"\nensure_JS_dep(\n    f\"bootstrap-slider-{bootstrap_slider_version}\",\n    f\"https://github.com/seiyria/bootstrap-slider/archive/refs/tags/v{bootstrap_slider_version}.zip\",\n)\n\njquery_version = \"2.2.4\"\nensure_JS_dep_single(\n    f\"https://code.jquery.com/jquery-{jquery_version}.min.js\",\n)\n# Important: when updating the D3 version, make sure to update the constant\n# D3_JS_FILE in mesa/visualization/ModularVisualization.py.\nd3_version = \"7.4.3\"\nensure_JS_dep_single(\n    f\"https://cdnjs.cloudflare.com/ajax/libs/d3/{d3_version}/d3.min.js\",\n    out_name=f\"d3-{d3_version}.min.js\",\n)\n# Important: Make sure to update CHART_JS_FILE in\n# mesa/visualization/ModularVisualization.py.\nchartjs_version = \"3.6.1\"\nensure_JS_dep_single(\n    f\"https://cdn.jsdelivr.net/npm/chart.js@{chartjs_version}/dist/chart.min.js\",\n    out_name=f\"chart-{chartjs_version}.min.js\",\n)\n\n\nsetup(\n    name=\"Mesa\",\n    version=version,\n    description=\"Agent-based modeling (ABM) in Python 3+\",\n    long_description=readme,\n    author=\"Project Mesa Team\",\n    author_email=\"projectmesa@googlegroups.com\",\n    url=\"https://github.com/projectmesa/mesa\",\n    packages=find_packages(),\n    package_data={\n        \"mesa\": [\n            \"visualization/templates/*.html\",\n            \"visualization/templates/css/*\",\n            \"visualization/templates/js/*\",\n            \"visualization/templates/external/**/*\",\n        ],\n        \"cookiecutter-mesa\": [\"cookiecutter-mesa/*\"],\n    },\n    include_package_data=True,\n    install_requires=requires,\n    extras_require=extras_require,\n    keywords=\"agent based modeling model ABM simulation multi-agent\",\n    license=\"Apache 2.0\",\n    zip_safe=False,\n    classifiers=[\n        \"Topic :: Scientific/Engineering\",\n        \"Topic :: Scientific/Engineering :: Artificial Life\",\n        \"Topic :: Scientific/Engineering :: Artificial Intelligence\",\n        \"Intended Audience :: Science/Research\",\n        \"Programming Language :: Python :: 3 :: Only\",\n        \"Programming Language :: Python :: 3.7\",\n        \"Programming Language :: Python :: 3.8\",\n        \"Programming Language :: Python :: 3.9\",\n        \"Programming Language :: Python :: 3.10\",\n        \"License :: OSI Approved :: Apache Software License\",\n        \"Operating System :: OS Independent\",\n        \"Development Status :: 3 - Alpha\",\n        \"Natural Language :: English\",\n    ],\n    entry_points=\"\"\"\n        [console_scripts]\n        mesa=mesa.main:cli\n    \"\"\",\n    python_requires=\">=3.7\",\n)\n", "path": "setup.py"}], "after_files": [{"content": "#!/usr/bin/env python\nimport re\nimport os\nimport urllib.request\nimport zipfile\nimport shutil\n\nfrom setuptools import setup, find_packages\nfrom codecs import open\n\nrequires = [\"click\", \"cookiecutter\", \"networkx\", \"numpy\", \"pandas\", \"tornado\", \"tqdm\"]\n\nextras_require = {\n    \"dev\": [\"black\", \"coverage\", \"flake8\", \"pytest >= 4.6\", \"pytest-cov\", \"sphinx\"],\n    \"docs\": [\"sphinx\", \"ipython\"],\n}\n\nversion = \"\"\nwith open(\"mesa/__init__.py\") as fd:\n    version = re.search(\n        r'^__version__\\s*=\\s*[\\'\"]([^\\'\"]*)[\\'\"]', fd.read(), re.MULTILINE\n    ).group(1)\n\nwith open(\"README.rst\", \"rb\", encoding=\"utf-8\") as f:\n    readme = f.read()\n\n# Ensure JS dependencies are downloaded\nexternal_dir = \"mesa/visualization/templates/external\"\n# We use a different path for single-file JS because some of them are loaded\n# the same way as Mesa JS files\nexternal_dir_single = \"mesa/visualization/templates/js/external\"\n# First, ensure that the external directories exists\nos.makedirs(external_dir, exist_ok=True)\nos.makedirs(external_dir_single, exist_ok=True)\n\n\ndef ensure_JS_dep(dirname, url):\n    dst_path = os.path.join(external_dir, dirname)\n    if os.path.isdir(dst_path):\n        # Do nothing if already downloaded\n        return\n    print(f\"Downloading the {dirname} dependency from the internet...\")\n    zip_file = dirname + \".zip\"\n    urllib.request.urlretrieve(url, zip_file)\n    with zipfile.ZipFile(zip_file, \"r\") as zip_ref:\n        zip_ref.extractall()\n    shutil.move(dirname, dst_path)\n    # Cleanup\n    os.remove(zip_file)\n    print(\"Done\")\n\n\ndef ensure_JS_dep_single(url, out_name=None):\n    # Used for downloading e.g. D3.js single file\n    if out_name is None:\n        out_name = url.split(\"/\")[-1]\n    dst_path = os.path.join(external_dir_single, out_name)\n    if os.path.isfile(dst_path):\n        return\n    print(f\"Downloading the {out_name} dependency from the internet...\")\n    urllib.request.urlretrieve(url, out_name)\n    shutil.move(out_name, dst_path)\n\n\n# Important: when you update JS dependency version, make sure to also update the\n# hardcoded included files and versions in: mesa/visualization/templates/modular_template.html\n\n# Ensure Bootstrap\nbootstrap_version = \"5.1.3\"\nensure_JS_dep(\n    f\"bootstrap-{bootstrap_version}-dist\",\n    f\"https://github.com/twbs/bootstrap/releases/download/v{bootstrap_version}/bootstrap-{bootstrap_version}-dist.zip\",\n)\n\n# Ensure Bootstrap Slider\nbootstrap_slider_version = \"11.0.2\"\nensure_JS_dep(\n    f\"bootstrap-slider-{bootstrap_slider_version}\",\n    f\"https://github.com/seiyria/bootstrap-slider/archive/refs/tags/v{bootstrap_slider_version}.zip\",\n)\n\n# Important: when updating the D3 version, make sure to update the constant\n# D3_JS_FILE in mesa/visualization/ModularVisualization.py.\nd3_version = \"7.4.3\"\nensure_JS_dep_single(\n    f\"https://cdnjs.cloudflare.com/ajax/libs/d3/{d3_version}/d3.min.js\",\n    out_name=f\"d3-{d3_version}.min.js\",\n)\n# Important: Make sure to update CHART_JS_FILE in\n# mesa/visualization/ModularVisualization.py.\nchartjs_version = \"3.6.1\"\nensure_JS_dep_single(\n    f\"https://cdn.jsdelivr.net/npm/chart.js@{chartjs_version}/dist/chart.min.js\",\n    out_name=f\"chart-{chartjs_version}.min.js\",\n)\n\n\nsetup(\n    name=\"Mesa\",\n    version=version,\n    description=\"Agent-based modeling (ABM) in Python 3+\",\n    long_description=readme,\n    author=\"Project Mesa Team\",\n    author_email=\"projectmesa@googlegroups.com\",\n    url=\"https://github.com/projectmesa/mesa\",\n    packages=find_packages(),\n    package_data={\n        \"mesa\": [\n            \"visualization/templates/*.html\",\n            \"visualization/templates/css/*\",\n            \"visualization/templates/js/*\",\n            \"visualization/templates/external/**/*\",\n        ],\n        \"cookiecutter-mesa\": [\"cookiecutter-mesa/*\"],\n    },\n    include_package_data=True,\n    install_requires=requires,\n    extras_require=extras_require,\n    keywords=\"agent based modeling model ABM simulation multi-agent\",\n    license=\"Apache 2.0\",\n    zip_safe=False,\n    classifiers=[\n        \"Topic :: Scientific/Engineering\",\n        \"Topic :: Scientific/Engineering :: Artificial Life\",\n        \"Topic :: Scientific/Engineering :: Artificial Intelligence\",\n        \"Intended Audience :: Science/Research\",\n        \"Programming Language :: Python :: 3 :: Only\",\n        \"Programming Language :: Python :: 3.7\",\n        \"Programming Language :: Python :: 3.8\",\n        \"Programming Language :: Python :: 3.9\",\n        \"Programming Language :: Python :: 3.10\",\n        \"License :: OSI Approved :: Apache Software License\",\n        \"Operating System :: OS Independent\",\n        \"Development Status :: 3 - Alpha\",\n        \"Natural Language :: English\",\n    ],\n    entry_points=\"\"\"\n        [console_scripts]\n        mesa=mesa.main:cli\n    \"\"\",\n    python_requires=\">=3.7\",\n)\n", "path": "setup.py"}]}