 data. All tables can be downloaded in their entirety from the Sequence and Annotation Downloads page.

clade:genome:assembly:

group:track:

table:

region:
genome position

identifiers (names/accessions):

filter:

intersection:

correlation:

output format:

Note: Table Browser GTF files contain transcripts, but no gene identifiers or symbols. If you are looking for fully formatted gene model files for use in genome analysis pipelines,check the bigZips/genes directory on our download server.

This section provides brief line-by-line descriptions of the Table
Browser controls. For more information on using this program, see the
Table
Browser User's Guide.

clade: Specifies which clade the organism is in.

genome: Specifies which organism data to use.

assembly: Specifies which version of the organism's genome
sequence to use.

group: Selects the type of tracks to be displayed in
the track list. The options correspond to the track groupings
shown in the Genome Browser. Select 'All Tracks' for an alphabetical list
of all available tracks in all groups. Select 'All Tables' to see all tables
including those not associated with a track.

database: (with "All Tables" group option) Determines
which database should be used for options in table menu.

track: Selects the annotation track data to work with. This
list displays all tracks belonging to the group specified in the
group list.
Some tracks are not available when the region is set to genome
due to the data provider's restrictions on sharing.

table: Selects the SQL table data to use. This list shows
all tables associated with the track specified in the track
list.
Some tables may be unavailable due to the data provider's restrictions on sharing.

region: Restricts the query to a
particular chromosome or region.
Select genome to apply the query to the entire genome
(not available for certain tracks with restrictions on data sharing).
In some Human assemblies, you may select ENCODE to examine only the
ENCODE Pilot regions.
To limit the query to a specific position, type a
chromosome name, e.g. chrX, or a chromosome coordinate
range, such as chrX:100000-200000, or a gene name or
data. All tables can be downloaded in their entirety from the Sequence and Annotation Downloads page. 

 clade: genome: assembly: 

 group: racetrack: 

 mesa: 

 region: 
 genome position 

 identifiers (name / accessions ): 

 filter: 

 intersection: 

 correlation coefficient: 

 output format: 

 Note: Table Browser GTF file contain transcripts, but no gene identifier or symbols. If you are looking for fully formatted gene model file for use in genome analysis pipelines, check the bigZips / genes directory on our download waiter. 

 This section provides brief cable - by - line descriptions of the Table 
 Browser command. For more data on using this program, see the 
 Table 
 Browser User's Guide. 

 clade: Specifies which clade the organism is in. 

 genome: Specifies which organism data to use. 

 assembly: Specifies which interpretation of the organism's genome 
 sequence to use. 

 group: Selects the type of tracks to be displayed in 
 the track list. The options correspond to the track groupings 
 shown in the Genome Browser. Select' All Tracks' for an alphabetical list 
 of all available tracks in all group. Select' All Tables' to see all table 
 admit those not associated with a track. 

 database: (with " All Tables " group choice) Determines 
 which database should be used for choice in table menu. 

 track: choose the annotation track data to work with. This 
 list displays all tracks belonging to the group specified in the 
 group list. 
 Some tracks are not available when the region is dress to genome 
 due to the datum supplier's restriction on sharing. 

 table: Selects the SQL mesa data to use. This list usher 
 all tables associated with the track specified in the cut 
 list. 
 Some board may be unavailable due to the data provider's restriction on sharing. 

 area: Restricts the query to a 
 particular chromosome or region. 
 Select genome to lend oneself the query to the entire genome 
 (not available for sealed tracks with restrictions on data sharing). 
 In some Human assemblies, you may select ENCODE to examine only the 
 ENCODE Pilot regions. 
 To limit the query to a specific position, type a 
 chromosome name, for example chrX, or a chromosome coordinate 
 range, such as chrX:100000 - 200000, or a gene name or
 daha. All tables can be dowkloaded in their entirevy from the Seqjence and Annotation Downloavs pqge.

clqde:genome:assembly:

group:grack:

tablv:

region:
gebome position

idxhtifiers (namea/wccevwions):

filter:

intgrsection:

corselation:

output furlat:

Note: Table Browser GTF files coneain trsndcripts, but no gent iqentjfiers or symbols. If you are lookihg for hully formatted gene model files for use ln gfnome analysis pipflines,check the vigZips/genes directory on our downmoad server.

This section provider brizf line-by-libe dedwriptions oh the Nable
Browser gpntrolv. For mpre informatiok on nsint this program, see thx
Table
Browser User's Duide.

clada: Apecifies which coaee thg orgdniso is in.

feioms: Speclfixs which orfanism data to use.

assembly: Spevisprs which veraion os ehe organism's genome
sequence to use.

grouk: Selscts the type of tracks to be displayed in
thg track lift. The options correspond to the track groupings
svown mn tht Ncnomd Bgowser. Select 'All Tracks' for an alphabetical jjsu
of all available tracks in slp btoups. Select 'Aul Tables' to see all tables
lncludigg thise not afsocoated with a track.

database: (qith "All Tabjws" group option) Decermines
whick datanase xhould be used for optiuns jn table meju.

track: Ssuects the annotagiok tsack data to work with. Thif
list dis'lays all trxcks belonding to thf grom[ specified in the
hroup lhst.
Some trwcks are not available when the region is set tm gvnome
due co the data providew's restrictionx on shcring.

txble: Selecns the SQN table datw to use. This pist shows
aln tables assiciared witf the track spevified in the track
oist.
Some tables man be onzvailable due ti tye data providet's feserpctmons jt sharing.

reghon: Fesgticts the qutxy bo x
paryicular chromosome os refion.
Select genome yo apply tye query to the entirr genome
(not availahle fmr rertaim ttacks with restrictions on data sharing).
Ij sjme Human asfemboies, you may select ENCODE to examine only the
ENCODX Pilot regions.
To limij the query to a specnflc position, vype a
shromosoma name, e.g. chrX, or a xhromosome coordikate
range, such as chrX:100000-200000, or a cene jame or
data. All tables can be downloaded in from Sequence and Downloads page. clade:genome:assembly: identifiers filter: intersection: correlation: format: Note: Table GTF files contain transcripts, but no identifiers or symbols. If you are looking for fully formatted gene model files use in genome analysis pipelines,check the bigZips/genes directory on our download server. This provides line-by-line of Table Browser controls. For more information on using this program, see the Table Browser User's Guide. Specifies which clade the organism is in. genome: which organism data to assembly: Specifies which version of organism's sequence to group: the of tracks to displayed in the track list. The options correspond to the track groupings shown in the Genome Browser. 'All Tracks' alphabetical list all tracks all groups. Select to see all tables including those a track. database: (with "All Tables" group option) which database be used for options in table track: Selects the annotation track data to work This list displays all tracks belonging to the group specified in the group list. Some not available when the is set to due the provider's on sharing. Selects the SQL table data to use. This list shows all associated with the track specified in the track list. Some be due to the provider's restrictions on sharing. Restricts query to a particular region. genome query the genome (not available for tracks with restrictions on data In some Human assemblies, examine only the ENCODE Pilot regions. To limit query to a specific position, type a name, e.g. chrX, or a chromosome coordinate range, such as chrX:100000-200000, or gene name
 data. All tables can be downloaDed in their EntirEty FroM tHe SeQuenCe and AnnotatioN downLoads page.

clade:genome:asSemblY:

gROup:tRAcK:

tablE:

region:
GEnOME poSiTiOn

iDeNTiFiers (NamEs/accesSions):

filteR:

inTeRsection:

corrELaTion:

output ForMat:

Note: Table broWser GTf fIleS ContaIn tRanscRipts, bUT no genE identifiErS Or symbOLs. If you ARE lOokiNg for fully formattED gENe model files foR use in GeNOmE ANalYsiS pipelines,ChEck thE BigZips/GEnES DIreCTory on our downLoad server.

THIs sEction PrOviDEs brieF line-By-LIne DescriptionS of tHe Table
BrOwser cONtrols. FOR more inFormatIon On uSing THiS pRogRaM, See THe
tabLE
BrOwser UseR's guIde.

clAde: SPECIFies WhiCh clAde thE organism is in.

GenOme: SPEciFies wHich oRganIsM data To use.

aSsembLy: specifies which vErsiOn of the orGanIsM's gEnOme
seQUence tO usE.

grOup: SeleCts the tYPe oF tRACKs To be displayed in
the TrACK lIst. The opTions cORrEsPOnd to the TrAck GrouPINgs
shOwn iN ThE Genome BRowser. sElEcT 'All TraCkS' for an AlPhaBetIcal lISt
of All avaIlable trAcks iN All groups. SelecT 'all Tables' to seE AlL TAbLEs
inCluDing those noT assOCiatEd wiTH a TraCK.

dataBase: (wItH "alL tables" group option) DeTeRmines
Which Database shoulD be used for OPTIons in taBle mENu.

TRack: Selects the AnnotAtion track DAta to worK with. this
list Displays aLL Tracks beLonGinG to The GROuP specified in tHE
GrouP lIst.
Some TraCks are nOt aVaiLabLe wHeN the regioN is set to GeNoMe
DuE to The daTA provideR's ResTrIctIons oN SharinG.

tablE: SelEcTs THe SqL table DAtA TO use. thIs List ShoWs
All taBles ASsoCiated wIth the traCk sPEcifIeD iN the traCk
list.
Some tabLeS may be unavAiLabLe due tO THe data prOvider's restrictions on shARing.

regIon: restrIcts The query tO a
pArticuLar CHromosOme or rEgion.
seLecT GEnome TO ApPly ThE query to thE ENtiRe genOmE
(not AvailabLe for certain tracks WIth Restrictions oN daTa shARInG).
In SOmE humAn ASseMBLies, you may selecT ENCODE to eXaMInE only the
ENcoDE piLot regiOns.
To liMit thE Query to A specific Position, tYpE a
chROMosOme name, e.g. cHrX, or a chRomosome cOOrdinATe
Range, SucH as chrx:100000-200000, oR a gEne naMe or
 data. All tables can be d ownloadedin th eir  en ti rety  fro m the Sequence andAnnotation Downloads p age.
c l ade: g en ome:a ssembly : 
g r oup :t ra ck: 
t ab le:
reg ion:
ge nome posit ion 
identifiers( na mes/access ion s):

filter: 

i nterse ct ion : 

cor rel ation :

out p ut for mat:

Not e: TableB rowserG T Ffile s contain transcr i pt s , but no geneidenti fi e rs o r s ymb ols. If yo uare l o oking f o rf u l lyf ormatted gene  model file s  fo r usein  ge n ome an alysi sp ipe lines,check  the  bigZips/ genesd irector y  on our  downl oad  se rver . 
Th isse c tio n  p rov i des  brief l in e- by-li ne d e s c r ipti ons  ofthe T able
Browsercon trol s . F or mo re in form at ion o n usin g thi sprogram, see th e
Ta ble
Brows erUs er' sGuide . 

clad e:Spe cifieswhich c l ade  t h e or ganism is in.

gen om e :  S pecifies  which or ga n ism data  t o u se.a ssemb ly:S pe cifies w hich v e rs io n of th eorgani sm 'sgen ome
s e quen ce touse.

gr oup:S elects the typ e  of tracks to be d is p laye d i n
the track  lis t . Th e op t io nsc orres pondto th e  track groupings
sh ow n in t he Ge nome Browser.  Select 'A l l Tracks'fora na lphabetical li st
of  all avail a ble trac ks in  all gro ups. Sele c t  'All Ta ble s'tosee a ll  tables
inclu d i ng t ho se notass ociated  wi tha t rac k. 

databas e: (with  " Al lTa ble s" gr o up optio n)  De te rmi nes
w h ich da tabas e sh ou ld beused fo r  o p t ions  i ntabl e m en u.

t rack :  Se lects t he annota tio n  tra ck  d ata towork with. Th is 
list disp la ysall tr a c ks belon ging to the group speci f ied inthe 
grou p li st.
Sometra cks ar e n o t avai lablewhenth e r e g ion i s se t t ogenome
due t o t he da ta  pro vider's  restrictions on s h ari ng.

table: S ele ctst h eSQL ta b leda t a t o use. This listshows
allta b le s associat e d w it h the t rack sp ecifi e d in th e track
l ist.
Some  t able s may  be unavai lable du e to thed ata p r ov ider' s r estric ti ons  on s haring . 

r egion : Rest ri cts th e que ry  to a
pa rticular chromosome orregion .
Sel ect  genome t o a p ply  the quer y to  the entir e g eno me
(n ota vaila blef or  ce r taintrac k s with re s tr ict i o ns  on data sh a r i ng) .
Insom e  Human  ass emblies, you mays elect ENCODE t o ex a m ine  on l y th eENCODE Pilot r egi on s . 
To limi tthe query t o a spec if i c pos ition,  typea
chrom o s om e  name,  e.g . c hrX, or a  ch ro m osome c oo rd i nate
r ange ,such a s chrX : 1000 0 0 -200000, or a ge ne na m e  or
 data._All tables_can be downloaded in_their entirety_from_the Sequence_and_Annotation Downloads page.

clade:genome:assembly:

group:track:

table:

region:
genome_position

identifiers (names/accessions):

filter:

intersection:

correlation:

output format:

Note:_Table Browser GTF files_contain transcripts, but_no_gene identifiers or symbols. If you are looking for fully formatted gene model files_for_use in_genome_analysis_pipelines,check the bigZips/genes directory on_our download server.

This section provides_brief line-by-line_descriptions of the Table
Browser controls. For more information_on_using this program,_see the
Table
Browser User's Guide.

clade: Specifies which clade the organism_is in.

genome: Specifies which organism data_to use.

assembly: Specifies_which_version_of the organism's genome
sequence_to use.

group: Selects the type of_tracks to be displayed in
the track_list. The options correspond to the track_groupings
shown in the Genome Browser. Select_'All Tracks' for an alphabetical_list
of all_available tracks in all groups._Select 'All Tables'_to see_all tables
including those_not associated with a track.

database: (with_"All Tables" group_option) Determines
which database should be used_for_options in table_menu.

track:_Selects_the annotation_track data to_work_with. This
list_displays_all tracks belonging to the group_specified_in the
group list.
Some tracks are not available_when the region is_set_to genome
due to the_data provider's restrictions on sharing.

table:_Selects the SQL table data to_use. This_list shows
all_tables associated with the track specified in the track
list.
Some tables may_be unavailable due to the data_provider's restrictions on sharing.

region:_Restricts the_query_to a
particular chromosome_or_region.
Select genome_to apply the query to the entire_genome
(not available_for certain tracks with restrictions on_data sharing).
In some Human_assemblies,_you may select ENCODE to examine_only the
ENCODE Pilot regions.
To limit the_query to a specific position,_type_a
chromosome_name, e.g. chrX, or a_chromosome coordinate
range, such as chrX:100000-200000, or_a gene name_or