Baggio was used scarcely and often as a substitute, scoring 4 goals in 18 appearances during the regular Serie A season. He made five appearances in the Coppa Italia, with his only goal coming against local rivals A.C. Milan in the second leg of the quarter-finals, as he helped Inter reach the final, only to be defeated by Lazio. Despite his limited playing time, Baggio still managed several important goals to help Inter to a fourth-place finish, alongside Parma, such as his match winning goal against Hellas Verona, which he scored after coming off the bench, after being excluded from the team since 18 December 1999. Baggio had also previously helped to set up Inter's equaliser during the match. This was the first time Baggio had scored for Inter since his goal on 27 May of the previous season, and in the post-match the interview, he denied accusations made by Lippi in regard to his personal form.
Baggio was used scarcely and often as a substitute, scoring 4 goals in 18 appearances during the regular Serie A season. He made five appearances in the Coppa Italia, with his only goal coming against local rivals A.C. Milan in the second leg of the quarter-finals, as he helped Inter reach the final, only to be defeated by Lazio. Despite his limited playing time, Baggio still managed several important goals to help Inter to a fourth-place finish, alongside Parma, such as his match winning goal against Hellas Verona, which he scored after coming off the bench, after being excluded from the team since 18 December 1999. Baggio had also previously helped to set up Inter's equaliser during the match. This was the first time Baggio had scored for Inter since his goal on 27 May of the previous season, and in the post-match the interview, he denied accusations made by Lippi in regard to his personal form.