9. The method according to claim 7 , further comprising collecting meta information for each of the plurality of sequence reads and matching the meta information to a single read in the at least one master sequence read file.
11. The method according to claim 9 , wherein the obtaining, identifying, and storing steps are performed by a computer system comprising a processor coupled to a non-transitory memory, and further wherein the collected and matched meta information is stored in a computer-readable output file.