1. A method for creating notes associated with a document, the method comprising: accessing the document, the document associated with a table of contents listing a plurality of headers extracted from the document and defining a structure of a plurality of sections of the document, wherein each header corresponds to a section of the document defined by the table of contents and comprises a textual description of the section, and wherein the document is configured to be rendered by an eReader browser application; sending for display to a user, a note window within a user interface of the eReader browser application; receiving a user input to generate a note in connection with the note window, the user input indicating a location within the document; linking the note window to a section of the document based on the user input, the linked section of the document including the indicated location and corresponding to one of the headers; adding the note to a note region in a note object, the note region associated with the linked section of the document; and accessing the note using the header corresponding to the linked section of the document.
10. The method of claim 1 : wherein the user input comprises an email, the email including note content and header information identifying the document and the location within the document; and wherein adding the note to the note region comprises: extracting the note content from the email; extracting the header information from the email; adding the extracted content to the note in the note region; and storing the extracted header information in association with the note.