1. A method for generating a pseudo-partial ordering of molecules used to train a molecular properties model, comprising: obtaining a set of property measurements for a plurality of molecules, wherein each measurement assigns a value for a property of interest relative to a single molecule; selecting ordered tuples of molecules, from the plurality, wherein the molecules, in an ordered tuple of molecules, are ordered relative to one another and the property of interest; and combining the selected ordered tuples of molecules to form the pseudo-partial ordering of molecules.