1. A microscope device for obtaining an image of a sample to be observed, comprising: a microscope information obtaining unit for obtaining microscope information, which is information about each configuration unit configuring the microscope device; a controller for receiving the microscope information, and for transmitting control information for controlling an operation of the configuration unit; a main body side transmitting/receiving unit for transmitting the microscope information to the controller, and for receiving the control information from the controller; and a main body side controlling unit for controlling the operation of the configuration unit based on the control information received by the main body side transmitting/receiving unit, wherein the controller comprises a controller side transmitting/receiving unit for receiving the microscope information transmitted from the main body side transmitting/receiving unit, and for transmitting the control information to the main body side transmitting/receiving unit, a displaying unit for displaying an operation screen on which an operation button display used to obtain an instruction for the operation of the configuration unit is arranged based on the microscope information received by the controller side transmitting/receiving unit, an instruction obtaining unit for obtaining the instruction by using the operation button display, and a controller side controlling unit for causing the controller side transmitting/receiving unit to transmit the control information, which corresponds to the instruction obtained by the instruction obtaining unit, by controlling the controller side transmitting/receiving unit.