1. A method of identifying a fault in an aircraft having at least one monitored system, the method comprising: receiving operational data from a plurality of sensors for the at least one monitored system during at least a portion of a flight; receiving user input data from a user input corresponding to the operation of the at least one monitored system; identifying a possible fault condition based on comparing the received operational data to at least one corresponding threshold; analyzing the user input data corresponding to the identified possible fault condition to determine when the user input data is symptomatic of the identified possible fault condition; identifying an actual fault condition, by a controller, when the user input data is determined to be symptomatic of the identified possible fault condition; and providing an indication of the identified actual fault condition.