1. An integrated system for providing a scientific simulation the system comprising: a processor coupled to a non-transitory memory having stored therein: at least one digital model comprising data representing a structure and a rig that defines animation dynamics for the structure such that a range of motion of the at least one digital model on an electronic display device is predetermined without manipulation from a user; and at least one molecular dynamics modality selectable by the user that applies one or more parameters that influence the animation dynamics of the structure in a simulation provided by the system.