1. A system for processing orders for at least one medical prescription comprising: a computer network; a computer processor connected to the network; storage and memory connected to the computer processor for storing orders, images of orders, and software modules; at least one scanner connected to the computer processor for scanning documents; communication link connected to the computer processor for communicating with users; at least one display connected to the computer processor for displaying order images; at least one protocol resolving database connected to the computer network; at least one facsimile machine in communication with the network; an image quality control processing module, stored in a computer readable storage media, said image quality control processing module executable in said computer processor, said image quality control processing module configured to review, accept and/or reject images captured by said at least one scanner; an order header processing module, stored in a computer readable storage media, said order header processing module executable in said computer processor, said order header processing module configured to review and receive non-clinical data associated with said order; an order completion processing module, stored in a computer readable storage media, said order completion processing module executable in said computer processor, said order completion processing module configured to review and receive clinical data associated with said order; a protocol resolution processing module, stored in a computer readable storage media, said protocol resolution processing module executable in said computer processor, said protocol resolution processing module configured to resolve applicable protocols associated with said order; a doctor calls processing module, stored in a computer readable storage media, said doctor calls processing module executable in said computer processor, said doctor calls processing module configured to receive information regarding said order; a command and control processing module, stored in a computer readable storage media, said command and control processing module executable in said computer processor, said command and control processing module configured to monitor and receive input to said system.