1. A computer implemented process for constructing a scalable output network model of a bioparticle, comprising the computer implemented steps of: (a) accessing a database of network gene components comprising an annotated network set of open reading frames (ORFs) of a bioparticle genome; (b) forming a data structure associating said network gene components with network reaction components, said data structure establishing a data set specifying a network model of connectivity and flow of said network reaction components, and (c) transforming said data set into a mathematical description of reactant fluxes defining said network model of connectivity and flow, wherein said mathematical description defines a scalable output network model of a bioparticle.