1. A method for filtering dictated and non-dictated sections of documents, the method comprising steps of: gathering speech recognition output and a first set of corresponding documents; conforming at least one associated document from the first set of corresponding documents to a selected speech recognition format; comparing the speech recognition output and the at least one associated document; determining, using a processing unit, long homogeneous sequences of misaligned tokens from the speech recognition output and the at least one associated document; detecting boundaries between dictated and non-dictated sections in the at least one associated document; and annotating the at least one associated document with the boundaries.