1. A system for managing document conversions, comprising: at least one server computer communicatively coupled to one or more devices on a network and running an isolation service configured to perform: first determining whether a native application associated with a native document type is already executing when a document having the native document type is ready for conversion, ensuring only a single instance of the native application executes for the conversion; causing the native application to load and convert the document to a new document format; and managing the conversion of the document by the single instance of the native application according to at least one specified document conversion operation parameter, condition, or setting, the at least one specified document conversion operation parameter, condition, or setting relating to functioning of the single instance of the native application, the managing including enforcing the at least one specified document conversion operation parameter, condition, or setting during the conversion of the document by the single instance of the native application, wherein the isolation service is further configured to perform restarting the native application when it does not comply with the at least one specified document conversion operation parameter, condition, or setting.