title: Problems running tests with Chutzpah when I use the Chutzpah.json file
body: <p>I am having problems getting Chutzpah to run my typescript tests when I provide a Chutzpah.json file.</p>
  
  <p>my project looks like this:</p>
  
  <p><img src="https://i.stack.imgur.com/WBntY.png" alt="enter image description here"></p>
  
  <p>and my Chutzpah.json file looks like this:</p>
  
  <pre><code>{
      "Compile": {
          "Mode": "External",
          "ExtensionsWithNoOutput": [ ".d.ts" ]
      },
      "Tests": [
          { "Include": "**/**.ts","Exclude": "**/**.d.ts" }
      ],
      "References": [
          {"Include": "../../hacapp.web/**/*.ts", "Exclude": "../../hacapp.web/**/**.d.ts" }
      ]
  }
  </code></pre>
  
  <p>when I run with this Chutzpah.json file then 0 tests are executed. The output of running the commandline runner with these arguments:</p>
  
  <blockquote>
    <p>chutzpah.consle.exe /path \hacapp.web\hacapp.web.Tests\Scrpts\TypescriptTests.ts /trace /debug</p>
  </blockquote>
  
  <p><a href="http://pastebin.com/JFVPYcaf" rel="nofollow noreferrer">is here</a></p>
  
  <p>The contents of the generated html file doesn't seem to contain any reference to the TypescriptTests.js file:</p>
  
  <pre><code>&lt;head&gt;
      &lt;meta charset="utf-8" /&gt;
      &lt;title&gt;QUnit Tests&lt;/title&gt;
      &lt;link rel="stylesheet" type="text/css" href="file:///C:/Users/sam/Source/Repos/chutzpah-master/ConsoleRunner/bin/Debug/TestFiles/QUnit/qunit.css"/&gt;
  &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/chutzpah-master/ConsoleRunner/bin/Debug/TestFiles/QUnit/qunit.js"&gt;&lt;/script&gt;
      &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/haccpapp/hacapp.web/hacapp.web/scripts/jquery-1.10.2.js"&gt;&lt;/script&gt;
  &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/haccpapp/hacapp.web/hacapp.web/scripts/knockout-3.0.0.js"&gt;&lt;/script&gt;
      &lt;script&gt;
          var amdTestPath = "";
          if (window.require &amp;&amp; typeof window.require === "function" &amp;&amp; amdTestPath !== "") {
              if (window.chutzpah) {
                  window.chutzpah.usingModuleLoader = true;
              }
  
              requirejs.config({
                  map: {
                      '*': {
  
                          }
                  }
              });
  
              window.QUnit.config.autostart = false;
              window.require([amdTestPath], function () {
                  console.log("!!_!! Starting QUnit from inline AMD call...");
                  if (!window._Chutzpah_covobj_name) {
                      window.QUnit.start();
                  }
              });
          }
      &lt;/script&gt;
  &lt;/head&gt; 
  </code></pre>
  
  <p>If I then rename the Chutzpah.json file so that it is no longer used and then run the command line tool again then this time it runs the tests and <a href="http://pastebin.com/rRyVrW4J" rel="nofollow noreferrer">this is in the log file</a>, and this is what the html looks like:</p>
  
  <pre><code>&lt;head&gt;
      &lt;meta charset="utf-8" /&gt;
      &lt;title&gt;QUnit Tests&lt;/title&gt;
      &lt;link rel="stylesheet" type="text/css" href="file:///C:/Users/sam/Source/Repos/chutzpah-master/ConsoleRunner/bin/Debug/TestFiles/QUnit/qunit.css"/&gt;
  &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/chutzpah-master/ConsoleRunner/bin/Debug/TestFiles/QUnit/qunit.js"&gt;&lt;/script&gt;
      &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/haccpapp/hacapp.web/hacapp.web/scripts/Workflow/_Chutzpah.1.WFDefinition.js"&gt;&lt;/script&gt;
  &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/haccpapp/hacapp.web/hacapp.web/scripts/jquery-1.10.2.js"&gt;&lt;/script&gt;
  &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/haccpapp/hacapp.web/hacapp.web/scripts/knockout-3.0.0.js"&gt;&lt;/script&gt;
      &lt;script type="text/javascript" src="file:///C:/Users/sam/Source/Repos/haccpapp/hacapp.web/hacapp.web.Tests/Scripts/_Chutzpah.1.TypescriptTests.js"&gt;&lt;/script&gt;
      &lt;script&gt;
          var amdTestPath = "";
          if (window.require &amp;&amp; typeof window.require === "function" &amp;&amp; amdTestPath !== "") {
              if (window.chutzpah) {
                  window.chutzpah.usingModuleLoader = true;
              }
  
              requirejs.config({
                  map: {
                      '*': {
  
                          }
                  }
              });
  
              window.QUnit.config.autostart = false;
              window.require([amdTestPath], function () {
                  console.log("!!_!! Starting QUnit from inline AMD call...");
                  if (!window._Chutzpah_covobj_name) {
                      window.QUnit.start();
                  }
              });
          }
      &lt;/script&gt;
  &lt;/head&gt;
  
  &lt;body&gt;
      &lt;h1 id="qunit-header"&gt;Unit Tests&lt;/h1&gt;
      &lt;h2 id="qunit-banner"&gt;&lt;/h2&gt;
      &lt;h2 id="qunit-userAgent"&gt;&lt;/h2&gt;
      &lt;ol id="qunit-tests"&gt;&lt;/ol&gt;
      &lt;div id="qunit-fixture"&gt;&lt;/div&gt;
  &lt;/body&gt;
  &lt;/html&gt;
  </code></pre>
  
  <p>What am I doing wrong with the configuration?</p>